Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10936254	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11915112	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12631106	0.97[ASN][1000 genomes]
rs13071041	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13082968	0.84[AMR][1000 genomes]
rs1388705	0.88[AMR][1000 genomes]
rs1388706	0.84[AMR][1000 genomes]
rs1388714	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492160	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1550157	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1586846	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1586848	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1844954	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1972827	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1972828	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1976207	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34595574	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35286282	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35462724	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs36070938	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3912845	0.81[AMR][1000 genomes]
rs4472059	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6767545	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6767735	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9868207	0.84[AMR][1000 genomes]
rs9879766	0.92[ASN][1000 genomes]
rs9882506	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2757901	chr3:161449993-161593770	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759195	chr3:161449993-161593770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3395930	chr3:161552299-161584754	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161570400-161573800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:161571800-161573200	Enhancers	NH-A	brain
3	chr3:161572000-161572800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:161572000-161572800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:161572000-161573000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr3:161572000-161573200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:161572200-161572800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:161572200-161572800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:161572200-161572800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:161572200-161572800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:161572200-161572800	Enhancers	Osteobl	bone
12	chr3:161572200-161573400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:161572200-161573400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: