Variant report

Variant	rs13082968
Chromosome Location	chr3:161610460-161610461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13082799	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1388702	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1388705	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1388706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1388714	0.84[AMR][1000 genomes]
rs1492146	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1492147	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1492148	0.81[ASN][1000 genomes]
rs1492154	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1492155	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1492156	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1532212	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1550157	0.80[AMR][1000 genomes]
rs1586846	0.86[AMR][1000 genomes]
rs1586847	0.84[AMR][1000 genomes]
rs1586848	0.84[AMR][1000 genomes]
rs1844954	0.80[AMR][1000 genomes]
rs1972827	0.80[AMR][1000 genomes]
rs1972828	0.80[AMR][1000 genomes]
rs1994744	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1994745	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1994746	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1994747	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35462724	0.80[AMR][1000 genomes]
rs3912845	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4472059	0.80[AMR][1000 genomes]
rs6767545	0.80[AMR][1000 genomes]
rs6767735	0.80[AMR][1000 genomes]
rs6772555	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7637869	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9868207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9882506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161607400-161611000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:161608600-161611400	Weak transcription	NHLF	lung
3	chr3:161608600-161611400	Weak transcription	Osteobl	bone
4	chr3:161608600-161611600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:161608800-161611200	Weak transcription	NHDF-Ad	bronchial
6	chr3:161608800-161611400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links