Variant report

Variant	rs1388702
Chromosome Location	chr3:161583341-161583342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11720338	0.80[ASN][1000 genomes]
rs12492932	0.80[ASN][1000 genomes]
rs12492972	0.80[ASN][1000 genomes]
rs13082799	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13082968	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13095820	0.80[ASN][1000 genomes]
rs13095995	0.80[ASN][1000 genomes]
rs1388699	0.98[ASN][1000 genomes]
rs1388700	0.99[ASN][1000 genomes]
rs1388701	0.99[ASN][1000 genomes]
rs1388705	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388706	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1492146	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492147	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492148	0.94[ASN][1000 genomes]
rs1492154	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1492155	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1492156	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1532212	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1586846	0.81[AMR][1000 genomes]
rs1994741	0.80[ASN][1000 genomes]
rs1994744	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1994745	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1994746	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1994747	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3912845	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62280990	0.82[ASN][1000 genomes]
rs6441408	0.99[ASN][1000 genomes]
rs6441410	0.86[ASN][1000 genomes]
rs6772555	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7637869	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9290101	0.81[ASN][1000 genomes]
rs9868207	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9882506	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2757901	chr3:161449993-161593770	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759195	chr3:161449993-161593770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3395930	chr3:161552299-161584754	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1834232	chr3:161581684-161604866	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161578200-161585800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:161578600-161587600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:161583200-161583600	Enhancers	Dnd41	blood

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