Variant report

Variant	rs1586846
Chromosome Location	chr3:161572595-161572596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10936254	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11915112	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12631106	0.99[ASN][1000 genomes]
rs13071041	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13082799	0.81[AMR][1000 genomes]
rs13082968	0.86[AMR][1000 genomes]
rs1388702	0.81[AMR][1000 genomes]
rs1388705	0.90[AMR][1000 genomes]
rs1388706	0.86[AMR][1000 genomes]
rs1388714	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1492146	0.81[AMR][1000 genomes]
rs1492147	0.81[AMR][1000 genomes]
rs1492154	0.81[AMR][1000 genomes]
rs1492155	0.80[AMR][1000 genomes]
rs1492160	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1550157	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1586847	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1586848	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1844954	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1972827	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1972828	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1976207	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34595574	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35286282	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35462724	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36070938	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3912845	0.82[AMR][1000 genomes]
rs4472059	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6767545	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6767735	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73170163	0.81[AMR][1000 genomes]
rs9868207	0.86[AMR][1000 genomes]
rs9879766	0.95[ASN][1000 genomes]
rs9882506	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2757901	chr3:161449993-161593770	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759195	chr3:161449993-161593770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3395930	chr3:161552299-161584754	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161570400-161573800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:161571800-161573200	Enhancers	NH-A	brain
3	chr3:161572000-161572600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr3:161572000-161572800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:161572000-161572800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:161572000-161573000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr3:161572000-161573200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:161572200-161572800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:161572200-161572800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:161572200-161572800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:161572200-161572800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:161572200-161572800	Enhancers	Osteobl	bone
13	chr3:161572200-161573400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr3:161572200-161573400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:161572400-161572600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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