Variant report

Variant	rs13072079
Chromosome Location	chr3:134987605-134987606
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923218	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080641	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080855	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13093562	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094179	0.86[EUR][1000 genomes]
rs13095925	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842883	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17712024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17712106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17712383	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3182239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34179831	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34206167	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34340628	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34344981	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34893823	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35092007	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35326767	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35533080	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35653041	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35805151	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35943770	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35944228	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36067487	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66525503	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66645582	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67171651	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67224719	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67358622	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806284	1.00[CHB][hapmap]
rs6806414	1.00[CHB][hapmap]
rs73220299	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13072079	PRR19	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134974000-134987800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:134979800-134989600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:134980600-134990000	Weak transcription	Fetal Brain Female	brain
4	chr3:134981800-134988200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:134984000-134989800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:134985000-134989800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:134985000-134990400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:134986800-134990400	Weak transcription	Psoas Muscle	Psoas
9	chr3:134987000-134990400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:134987600-134990200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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