Variant report

Variant	rs17712024
Chromosome Location	chr3:134962423-134962424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134955199..134957729-chr3:134959648..134962446,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923218	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071859	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072079	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080641	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080855	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13093562	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095925	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842883	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17712106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17712383	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3182239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34179831	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34206167	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34340628	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34344981	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34893823	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35092007	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35326767	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35533080	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35653041	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35805151	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35844472	0.82[EUR][1000 genomes]
rs35943770	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35944228	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36067487	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66525503	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66645582	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67171651	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67224719	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67358622	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796578	1.00[YRI][hapmap]
rs6806284	1.00[CHB][hapmap]
rs6806414	1.00[CHB][hapmap]
rs73220299	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17712024	PRR19	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134958000-134970400	Weak transcription	GM12878-XiMat	blood
2	chr3:134958400-134962600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:134958600-134964800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:134958600-134977200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:134958800-134965400	Weak transcription	Brain Germinal Matrix	brain
6	chr3:134961000-134977800	Weak transcription	Fetal Brain Female	brain
7	chr3:134961400-134968000	Weak transcription	Psoas Muscle	Psoas
8	chr3:134961400-134977800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:134961800-134965000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:134961800-134966800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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