The 2.0 version of rSNPBase

Variant report

Variant rs13075579
Chromosome Location chr3:135690784-135690785
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:135685400-135692600 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr3:135685600-135693800 Weak transcription Gastric stomach
3 chr3:135685800-135693800 Weak transcription Lung lung
4 chr3:135686600-135693400 Weak transcription Right Ventricle heart
5 chr3:135686600-135694400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
6 chr3:135686800-135692600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr3:135687000-135690800 Enhancers NHDF-Ad bronchial
8 chr3:135687000-135691000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr3:135687000-135691200 Weak transcription iPS-20b Cell Line embryonic stem cell
10 chr3:135687000-135691800 Weak transcription H1 Cell Line embryonic stem cell
11 chr3:135687000-135692400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr3:135687000-135692800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr3:135687000-135692800 Weak transcription Right Atrium heart
14 chr3:135687000-135693200 Weak transcription Fetal Lung lung
15 chr3:135687000-135693200 Weak transcription Fetal Stomach stomach
16 chr3:135687200-135691400 Weak transcription HUES6 Cell Line embryonic stem cell
17 chr3:135687200-135691600 Weak transcription iPS-18 Cell Line embryonic stem cell
18 chr3:135687200-135692600 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr3:135687400-135692800 Weak transcription H9 Cell Line embryonic stem cell
20 chr3:135687400-135692800 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr3:135687400-135692800 Weak transcription Pancreatic Islets Pancreatic Islet
22 chr3:135687400-135693400 Weak transcription Left Ventricle heart
23 chr3:135687600-135691200 Enhancers Skeletal Muscle Female skeletal muscle
24 chr3:135687600-135691600 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr3:135687600-135691800 Weak transcription Stomach Mucosa stomach
26 chr3:135687600-135694000 Enhancers Colon Smooth Muscle Colon
27 chr3:135687600-135700400 Weak transcription Fetal Intestine Small intestine
28 chr3:135687800-135692600 Weak transcription Fetal Heart heart
29 chr3:135688000-135694200 Enhancers Brain Hippocampus Middle brain
30 chr3:135688200-135691000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr3:135688200-135691000 Enhancers Brain Inferior Temporal Lobe brain
32 chr3:135688400-135690800 Enhancers Brain Cingulate Gyrus brain
33 chr3:135688400-135692800 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr3:135688600-135690800 Enhancers Psoas Muscle Psoas
35 chr3:135688800-135691200 Enhancers Brain Anterior Caudate brain
36 chr3:135688800-135694200 Enhancers Brain Substantia Nigra brain
37 chr3:135689000-135691000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
38 chr3:135689400-135695200 Enhancers Fetal Adrenal Gland Adrenal Gland
39 chr3:135689800-135691000 Enhancers Stomach Smooth Muscle stomach
40 chr3:135689800-135691200 Enhancers Brain Angular Gyrus brain
41 chr3:135689800-135692200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr3:135689800-135692400 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr3:135689800-135692800 Weak transcription NH-A brain
44 chr3:135690000-135692200 Weak transcription Breast Myoepithelial Primary Cells Breast
45 chr3:135690000-135692600 Weak transcription NHLF lung
46 chr3:135690000-135692800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr3:135690000-135692800 Weak transcription Aorta Aorta
48 chr3:135690200-135692600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr3:135690200-135694200 Enhancers Rectal Smooth Muscle rectum
50 chr3:135690200-135701200 Weak transcription NHEK skin

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Last update: Aug 31, 2015