Variant report

Variant	rs35532770
Chromosome Location	chr3:135730912-135730913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135723078..135725876-chr3:135730091..135731868,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs12630389	0.91[ASN][1000 genomes]
rs12632791	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12633805	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12637541	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13059064	0.87[ASN][1000 genomes]
rs13065499	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13069408	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13072433	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13072690	0.87[ASN][1000 genomes]
rs13072782	0.87[ASN][1000 genomes]
rs13075579	0.97[ASN][1000 genomes]
rs13078865	0.86[ASN][1000 genomes]
rs13084404	0.82[ASN][1000 genomes]
rs13092707	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13097172	0.82[ASN][1000 genomes]
rs13097176	0.82[ASN][1000 genomes]
rs13097267	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13100235	0.83[ASN][1000 genomes]
rs1523593	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1523598	0.82[ASN][1000 genomes]
rs1523599	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1523600	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16843560	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16843611	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2140450	0.87[ASN][1000 genomes]
rs2177407	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2400649	0.87[ASN][1000 genomes]
rs34447526	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34683314	0.83[EUR][1000 genomes]
rs34706807	0.83[EUR][1000 genomes]
rs35097316	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35209948	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35264626	0.83[EUR][1000 genomes]
rs35946332	0.87[ASN][1000 genomes]
rs35961065	0.91[ASN][1000 genomes]
rs3946444	0.87[ASN][1000 genomes]
rs4075999	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4331626	0.88[ASN][1000 genomes]
rs4678224	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4678288	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4678432	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4678434	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4678435	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55873361	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56152207	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57594457	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60070757	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61791712	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61791714	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6439603	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439605	0.86[ASN][1000 genomes]
rs6439609	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6439610	0.87[ASN][1000 genomes]
rs6439614	0.86[ASN][1000 genomes]
rs6439615	0.87[ASN][1000 genomes]
rs6439618	0.87[ASN][1000 genomes]
rs6439622	0.97[ASN][1000 genomes]
rs6439623	0.97[ASN][1000 genomes]
rs6439624	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6770366	0.84[ASN][1000 genomes]
rs6771950	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6775261	0.87[ASN][1000 genomes]
rs6779903	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6793273	0.87[ASN][1000 genomes]
rs6803786	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7433592	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7610302	0.87[ASN][1000 genomes]
rs7625177	0.87[ASN][1000 genomes]
rs7625607	0.89[ASN][1000 genomes]
rs7635621	0.87[ASN][1000 genomes]
rs7650079	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9289501	0.85[ASN][1000 genomes]
rs940229	0.87[ASN][1000 genomes]
rs9682712	0.87[ASN][1000 genomes]
rs9758578	0.96[ASN][1000 genomes]
rs9846554	0.86[ASN][1000 genomes]
rs9852009	0.87[ASN][1000 genomes]
rs9852169	0.87[ASN][1000 genomes]
rs9856799	0.87[ASN][1000 genomes]
rs9868239	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135707000-135736400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr3:135707000-135741600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:135710000-135737600	Weak transcription	Left Ventricle	heart
4	chr3:135711600-135731000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:135711800-135737600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:135714000-135735600	Weak transcription	Fetal Heart	heart
7	chr3:135714200-135737600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:135714800-135737600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:135715600-135732200	Weak transcription	Fetal Lung	lung
10	chr3:135715600-135737000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:135715600-135737600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:135716200-135736400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:135717200-135737600	Weak transcription	NHEK	skin
14	chr3:135717200-135747000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:135717400-135735200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:135717800-135737400	Weak transcription	HSMMtube	muscle
17	chr3:135718000-135753000	Weak transcription	Fetal Kidney	kidney
18	chr3:135718200-135736600	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:135718400-135737200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:135718800-135737600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:135719000-135735600	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:135719000-135741600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr3:135719200-135746200	Weak transcription	Fetal Intestine Large	intestine
24	chr3:135721800-135763600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr3:135726200-135737600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:135726200-135737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:135726200-135748000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:135726400-135758400	Weak transcription	Lung	lung
29	chr3:135726600-135737600	Weak transcription	Brain Angular Gyrus	brain
30	chr3:135727200-135746600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:135727400-135737600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:135727400-135760600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:135727800-135737400	Weak transcription	HMEC	breast
34	chr3:135727800-135737600	Weak transcription	NHLF	lung
35	chr3:135727800-135741600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:135727800-135741600	Weak transcription	Pancreas	Pancrea
37	chr3:135727800-135769400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr3:135728000-135736400	Weak transcription	Right Ventricle	heart
39	chr3:135728000-135736600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:135728000-135737200	Weak transcription	NHDF-Ad	bronchial
41	chr3:135728000-135748000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr3:135728200-135737000	Weak transcription	Fetal Stomach	stomach
43	chr3:135728200-135746400	Weak transcription	Ovary	ovary
44	chr3:135728800-135737600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr3:135728800-135737800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:135730000-135731200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:135730400-135731000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr3:135730400-135731400	Enhancers	Osteobl	bone
49	chr3:135730600-135731000	Enhancers	Psoas Muscle	Psoas
50	chr3:135730800-135737600	Weak transcription	HSMM	muscle

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