Variant report

Variant	rs35209948
Chromosome Location	chr3:135773123-135773124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135767256..135769755-chr3:135772034..135773632,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12630389	0.83[ASN][1000 genomes]
rs12632791	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12633805	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12637541	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13065499	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13069408	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13072433	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13075579	0.88[ASN][1000 genomes]
rs13092707	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13097267	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1523593	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1523599	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1523600	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16843560	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16843611	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2177407	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34447526	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34683314	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34706807	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35097316	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35264626	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35532770	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35961065	0.83[ASN][1000 genomes]
rs4075999	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4678224	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4678288	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4678432	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678434	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678435	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55873361	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56152207	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57594457	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60070757	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61791712	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61791714	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6439603	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6439609	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6439622	0.89[ASN][1000 genomes]
rs6439623	0.89[ASN][1000 genomes]
rs6439624	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6771950	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6779903	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6803786	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7433592	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7625607	0.81[ASN][1000 genomes]
rs7650079	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9758578	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv4023	chr3:135772198-135816635	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135738000-135775800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:135742800-135774200	Weak transcription	HMEC	breast
3	chr3:135746200-135790000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:135750800-135775800	Weak transcription	Liver	Liver
5	chr3:135755200-135801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:135761000-135802400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:135761600-135783400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:135762200-135774000	Weak transcription	Brain Angular Gyrus	brain
9	chr3:135763000-135785600	Weak transcription	Brain Anterior Caudate	brain
10	chr3:135763200-135775000	Strong transcription	Fetal Muscle Leg	muscle
11	chr3:135763200-135776800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:135763600-135775600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:135764400-135790400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:135764600-135773800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:135764600-135774400	Weak transcription	NHEK	skin
16	chr3:135764600-135778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:135764800-135775800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:135764800-135790400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:135765000-135774200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:135765000-135776400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:135765000-135777800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:135765000-135781000	Weak transcription	Fetal Brain Female	brain
23	chr3:135765000-135781200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:135765000-135781200	Weak transcription	Fetal Intestine Small	intestine
25	chr3:135765000-135786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:135765000-135801800	Weak transcription	Esophagus	oesophagus
27	chr3:135765400-135777600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:135765600-135784200	Weak transcription	Fetal Kidney	kidney
29	chr3:135765600-135785400	Weak transcription	Pancreas	Pancrea
30	chr3:135767000-135775000	Strong transcription	Stomach Smooth Muscle	stomach
31	chr3:135767200-135774400	Weak transcription	Fetal Brain Male	brain
32	chr3:135768000-135774000	Weak transcription	HUVEC	blood vessel
33	chr3:135768000-135776600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:135768800-135774000	Weak transcription	Fetal Heart	heart
35	chr3:135768800-135776600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:135768800-135800800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr3:135769400-135774200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:135769600-135774000	Weak transcription	Adipose Nuclei	Adipose
39	chr3:135769600-135774200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:135769600-135774800	Weak transcription	NHLF	lung
41	chr3:135769800-135773600	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:135769800-135789400	Weak transcription	Colon Smooth Muscle	Colon
43	chr3:135769800-135789800	Weak transcription	Psoas Muscle	Psoas
44	chr3:135769800-135790000	Weak transcription	Aorta	Aorta
45	chr3:135769800-135790400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:135770000-135774000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:135770000-135776600	Weak transcription	Brain Hippocampus Middle	brain
48	chr3:135770000-135787200	Weak transcription	Osteobl	bone
49	chr3:135770000-135789800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:135770000-135800800	Weak transcription	Fetal Intestine Large	intestine

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