Variant report

Variant	rs34683314
Chromosome Location	chr3:135791069-135791070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135788877..135792227-chr3:135914982..135916862,3	MCF-7	breast:
2	chr3:135788920..135791569-chr3:136470334..136472063,2	MCF-7	breast:
3	chr3:135790761..135791452-chr3:136823712..136824361,2	K562	blood:
4	chr3:135790318..135792119-chr3:135912144..135914896,2	K562	blood:

Variant related genes	Relation type
ENSG00000261758	Chromatin interaction
ENSG00000174579	Chromatin interaction
ENSG00000118007	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12632791	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12633805	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13065499	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13069408	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13072433	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13079037	0.82[ASN][1000 genomes]
rs13092707	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1523593	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1523600	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16843611	0.81[EUR][1000 genomes]
rs2177407	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34447526	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34706807	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35209948	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35264626	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35532770	0.83[EUR][1000 genomes]
rs35773450	0.89[EUR][1000 genomes]
rs4075999	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4678224	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4678288	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4678432	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4678434	0.82[EUR][1000 genomes]
rs4678435	0.82[EUR][1000 genomes]
rs55873361	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56152207	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60070757	0.80[EUR][1000 genomes]
rs61791712	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61791714	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6439609	0.81[EUR][1000 genomes]
rs6439624	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6771950	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6779903	0.81[EUR][1000 genomes]
rs6803786	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7650079	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv4023	chr3:135772198-135816635	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135755200-135801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:135761000-135802400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:135765000-135801800	Weak transcription	Esophagus	oesophagus
4	chr3:135768800-135800800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:135770000-135800800	Weak transcription	Fetal Intestine Large	intestine
6	chr3:135771200-135802000	Weak transcription	Brain Germinal Matrix	brain
7	chr3:135771200-135809600	Weak transcription	Gastric	stomach
8	chr3:135774400-135802000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:135775000-135809600	Weak transcription	Fetal Brain Male	brain
10	chr3:135775000-135809600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:135781400-135801600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:135781400-135802000	Weak transcription	Fetal Intestine Small	intestine
13	chr3:135781400-135803000	Weak transcription	Right Ventricle	heart
14	chr3:135784200-135805600	Weak transcription	Stomach Mucosa	stomach
15	chr3:135785000-135798400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:135785600-135792200	Weak transcription	Fetal Lung	lung
17	chr3:135785600-135799000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:135785600-135801800	Weak transcription	Pancreas	Pancrea
19	chr3:135787800-135791400	Enhancers	NH-A	brain
20	chr3:135788600-135791200	Enhancers	HMEC	breast
21	chr3:135788800-135798600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:135789200-135791200	Strong transcription	Fetal Muscle Leg	muscle
23	chr3:135789400-135791400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:135789800-135791400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr3:135790000-135791400	Enhancers	Placenta	Placenta
26	chr3:135790200-135791600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:135790200-135801800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:135790200-135801800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:135790200-135801800	Weak transcription	Ovary	ovary
30	chr3:135790200-135802800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:135790200-135830800	Weak transcription	Psoas Muscle	Psoas
32	chr3:135790600-135791400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:135790600-135791600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:135790600-135795800	Weak transcription	Right Atrium	heart
35	chr3:135790600-135798600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:135790600-135801400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:135790600-135809600	Weak transcription	Colon Smooth Muscle	Colon
38	chr3:135790800-135791200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:135790800-135791200	Enhancers	NHDF-Ad	bronchial
40	chr3:135790800-135791600	Enhancers	Osteobl	bone
41	chr3:135790800-135792800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:135790800-135793200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:135790800-135794200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr3:135790800-135794200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr3:135790800-135796600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:135790800-135798400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr3:135790800-135799000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr3:135790800-135800400	Weak transcription	Left Ventricle	heart
49	chr3:135790800-135801600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:135790800-135801800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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