Variant report

Variant	rs13076408
Chromosome Location	chr3:25179376-25179377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13061437	0.81[AFR][1000 genomes]
rs13068891	0.81[AFR][1000 genomes]
rs13099080	1.00[ASN][1000 genomes]
rs17517792	0.81[AFR][1000 genomes]
rs34112261	0.81[AFR][1000 genomes]
rs34283888	0.81[AFR][1000 genomes]
rs34370374	0.81[AFR][1000 genomes]
rs35045659	0.81[AFR][1000 genomes]
rs35069077	0.81[AFR][1000 genomes]
rs35183943	0.90[EUR][1000 genomes]
rs35396731	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35806066	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36023080	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36109861	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56103690	1.00[ASN][1000 genomes]
rs56104647	1.00[ASN][1000 genomes]
rs57828525	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6763490	0.89[ASN][1000 genomes]
rs6771604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778399	0.89[ASN][1000 genomes]
rs67987013	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6804869	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71311525	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71311526	0.81[AFR][1000 genomes]
rs71622827	0.81[AFR][1000 genomes]
rs73048443	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73049948	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7611139	1.00[ASN][1000 genomes]
rs7636344	1.00[ASN][1000 genomes]
rs9812604	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869089	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25175800-25184200	Weak transcription	Fetal Lung	lung
2	chr3:25179200-25179600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:25179200-25179600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links