Variant report

Variant	rs13079512
Chromosome Location	chr3:34292645-34292646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34285723..34288551-chr3:34291607..34294875,3	K562	blood:
2	chr3:34286135..34288097-chr3:34290697..34293518,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13063802	0.90[ASN][1000 genomes]
rs13097138	0.90[ASN][1000 genomes]
rs1401341	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1401344	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1401345	0.90[ASN][1000 genomes]
rs1518878	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1518879	0.90[ASN][1000 genomes]
rs1518888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1518891	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1878862	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2139171	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34891554	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4267602	0.89[ASN][1000 genomes]
rs4514999	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4538327	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4678461	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4678462	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6793674	0.87[ASN][1000 genomes]
rs7631143	0.91[ASN][1000 genomes]
rs7642509	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs883057	0.96[ASN][1000 genomes]
rs939021	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs939022	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs939023	0.96[ASN][1000 genomes]
rs9827191	0.91[ASN][1000 genomes]
rs9827539	0.92[ASN][1000 genomes]
rs9827879	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3324522	chr3:34291348-34293496	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3421921	chr3:34291748-34293096	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34285800-34293600	Weak transcription	Aorta	Aorta
2	chr3:34291400-34297000	Weak transcription	Thymus	Thymus
3	chr3:34292600-34297400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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