Variant report

Variant	rs4678462
Chromosome Location	chr3:34259834-34259835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34254296..34256628-chr3:34259423..34261115,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13063802	0.98[ASN][1000 genomes]
rs13079512	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13097138	0.98[ASN][1000 genomes]
rs1401341	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1401344	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1401345	0.98[ASN][1000 genomes]
rs1518878	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1518879	0.98[ASN][1000 genomes]
rs1518888	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1518891	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1878862	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2139171	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34891554	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4267602	0.96[ASN][1000 genomes]
rs4514999	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4538327	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4678461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793674	0.95[ASN][1000 genomes]
rs7631143	0.99[ASN][1000 genomes]
rs7642509	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs883057	0.94[ASN][1000 genomes]
rs939021	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs939022	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs939023	0.93[ASN][1000 genomes]
rs9811006	0.96[CEU][hapmap]
rs9827191	0.99[ASN][1000 genomes]
rs9827539	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34255200-34261600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:34256000-34260000	Enhancers	Fetal Brain Male	brain
3	chr3:34258600-34260000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:34259600-34262200	Enhancers	HUVEC	blood vessel
5	chr3:34259800-34260000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:34259800-34261600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:34259800-34261800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:34259800-34262000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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