Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13063802	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13079512	0.91[ASN][1000 genomes]
rs13097138	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1401341	0.94[ASN][1000 genomes]
rs1401344	0.98[ASN][1000 genomes]
rs1401345	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1518878	0.98[ASN][1000 genomes]
rs1518879	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1518888	0.94[ASN][1000 genomes]
rs1518891	0.98[ASN][1000 genomes]
rs1878862	0.98[ASN][1000 genomes]
rs2139171	0.96[ASN][1000 genomes]
rs34891554	0.98[ASN][1000 genomes]
rs4267602	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4514999	0.98[ASN][1000 genomes]
rs4538327	0.98[ASN][1000 genomes]
rs4678461	0.99[ASN][1000 genomes]
rs4678462	0.99[ASN][1000 genomes]
rs6793674	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7642509	0.96[ASN][1000 genomes]
rs883057	0.95[ASN][1000 genomes]
rs939021	0.94[ASN][1000 genomes]
rs939022	0.94[ASN][1000 genomes]
rs939023	0.94[ASN][1000 genomes]
rs9827191	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827539	0.99[ASN][1000 genomes]
rs9827879	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3463307	chr3:34263978-34265637	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	esv3463308	chr3:34264076-34265533	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv3463310	chr3:34264076-34265533	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv12957	chr3:34264096-34265440	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7631143	CMTM8	cis	parietal	SCAN
rs7631143	DLEC1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34264200-34265000	Enhancers	HUVEC	blood vessel
2	chr3:34264400-34265000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search: