Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1375512	1.00[ASN][1000 genomes]
rs1449299	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1579969	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843153	1.00[ASN][1000 genomes]
rs17339226	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs17340282	0.89[ASN][1000 genomes]
rs2595907	1.00[CHB][hapmap]
rs2713749	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs2713758	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2713798	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs55687619	0.90[ASN][1000 genomes]
rs56077494	0.89[ASN][1000 genomes]
rs56237429	0.90[ASN][1000 genomes]
rs59476872	1.00[ASN][1000 genomes]
rs6774218	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs6787197	1.00[ASN][1000 genomes]
rs6787878	0.90[ASN][1000 genomes]
rs73141447	0.89[ASN][1000 genomes]
rs73143061	0.90[ASN][1000 genomes]
rs73143062	0.90[ASN][1000 genomes]
rs73143064	0.90[ASN][1000 genomes]
rs73143072	0.90[ASN][1000 genomes]
rs73144908	0.90[ASN][1000 genomes]
rs73144910	0.90[ASN][1000 genomes]
rs73144915	0.90[ASN][1000 genomes]
rs73144970	1.00[ASN][1000 genomes]
rs73149160	0.89[ASN][1000 genomes]
rs73149173	0.85[ASN][1000 genomes]
rs7621518	1.00[ASN][1000 genomes]
rs7623956	0.90[ASN][1000 genomes]
rs7625454	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs7641631	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs7643050	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100730000-100745800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:100736200-100739400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:100736200-100744800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:100736400-100737200	Enhancers	HUVEC	blood vessel
5	chr3:100736400-100737800	Weak transcription	NHDF-Ad	bronchial
6	chr3:100736400-100738800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:100736600-100738800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:100736600-100739000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:100736800-100737600	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:100737000-100737400	Weak transcription	Osteobl	bone

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