Variant report

Variant	rs73149173
Chromosome Location	chr3:100755162-100755163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13085823	0.85[ASN][1000 genomes]
rs1375512	0.85[ASN][1000 genomes]
rs1579969	0.85[ASN][1000 genomes]
rs16843153	0.85[ASN][1000 genomes]
rs16843185	0.85[ASN][1000 genomes]
rs17340282	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2713758	0.80[ASN][1000 genomes]
rs56077494	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59476872	0.85[ASN][1000 genomes]
rs6774218	0.83[AMR][1000 genomes]
rs6787197	0.85[ASN][1000 genomes]
rs6787878	0.81[AMR][1000 genomes]
rs73141447	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73144910	0.81[AMR][1000 genomes]
rs73144970	0.85[ASN][1000 genomes]
rs73149160	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7621518	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7641631	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100754000-100756000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:100754000-100756600	Enhancers	HUVEC	blood vessel
3	chr3:100754200-100756400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:100754400-100755400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:100754400-100755400	Enhancers	HSMM	muscle
6	chr3:100754400-100755400	Enhancers	NH-A	brain
7	chr3:100754400-100755400	Enhancers	NHEK	skin
8	chr3:100754400-100755600	Enhancers	Adipose Nuclei	Adipose
9	chr3:100754400-100756000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:100754400-100756000	Enhancers	Hela-S3	cervix
11	chr3:100754400-100756000	Enhancers	HSMMtube	muscle
12	chr3:100754400-100756000	Enhancers	NHLF	lung
13	chr3:100754400-100756000	Enhancers	Osteobl	bone
14	chr3:100754400-100756200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:100754400-100756200	Enhancers	HMEC	breast
16	chr3:100754400-100756600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:100754400-100757600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:100754400-100758800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:100754600-100755600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:100754800-100755200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:100754800-100755200	Flanking Active TSS	NHDF-Ad	bronchial
22	chr3:100754800-100755800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:100754800-100756200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr3:100755000-100755400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:100755000-100755400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:100755000-100755600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:100755000-100755800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:100755000-100755800	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr3:100755000-100755800	Flanking Active TSS	A549	lung
30	chr3:100755000-100756000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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