Variant report
| Variant | rs1579969 |
|---|---|
| Chromosome Location | chr3:100742329-100742330 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:100738176..100740012-chr3:100741389..100744208,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs13085823 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1375512 | 1.00[ASN][1000 genomes] |
| rs1449299 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs16843153 | 1.00[ASN][1000 genomes] |
| rs17339226 | 0.90[ASN][1000 genomes] |
| rs17340282 | 0.89[ASN][1000 genomes] |
| rs2713749 | 0.90[ASN][1000 genomes] |
| rs2713758 | 0.83[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs55687619 | 0.90[ASN][1000 genomes] |
| rs56077494 | 0.89[ASN][1000 genomes] |
| rs56237429 | 0.90[ASN][1000 genomes] |
| rs59476872 | 1.00[ASN][1000 genomes] |
| rs6774218 | 0.90[ASN][1000 genomes] |
| rs6787197 | 1.00[ASN][1000 genomes] |
| rs6787878 | 0.90[ASN][1000 genomes] |
| rs73141447 | 0.89[ASN][1000 genomes] |
| rs73143061 | 0.90[ASN][1000 genomes] |
| rs73143062 | 0.90[ASN][1000 genomes] |
| rs73143064 | 0.90[ASN][1000 genomes] |
| rs73143072 | 0.90[ASN][1000 genomes] |
| rs73144908 | 0.90[ASN][1000 genomes] |
| rs73144910 | 0.90[ASN][1000 genomes] |
| rs73144915 | 0.90[ASN][1000 genomes] |
| rs73144970 | 1.00[ASN][1000 genomes] |
| rs73149160 | 0.89[ASN][1000 genomes] |
| rs73149173 | 0.85[ASN][1000 genomes] |
| rs7621518 | 1.00[ASN][1000 genomes] |
| rs7623956 | 0.90[ASN][1000 genomes] |
| rs7625454 | 0.90[ASN][1000 genomes] |
| rs7641631 | 0.90[ASN][1000 genomes] |
| rs7643050 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931417 | chr3:100547347-101183844 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | esv2757881 | chr3:100613387-100776497 | Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2759163 | chr3:100613387-100776497 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv877222 | chr3:100715576-101038297 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:100730000-100745800 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 2 | chr3:100736200-100744800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
