Variant report

Variant	rs13089590
Chromosome Location	chr3:135174907-135174908
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1002893	0.83[ASN][1000 genomes]
rs10935170	0.81[ASN][1000 genomes]
rs11706224	0.81[ASN][1000 genomes]
rs11709770	0.81[ASN][1000 genomes]
rs11712517	0.83[ASN][1000 genomes]
rs11712634	0.83[ASN][1000 genomes]
rs1393320	0.83[ASN][1000 genomes]
rs1393321	0.83[ASN][1000 genomes]
rs1526932	0.81[ASN][1000 genomes]
rs1526933	0.85[ASN][1000 genomes]
rs1526942	0.83[ASN][1000 genomes]
rs16843013	0.89[ASN][1000 genomes]
rs1995394	0.83[ASN][1000 genomes]
rs1995395	0.83[ASN][1000 genomes]
rs36122071	0.83[ASN][1000 genomes]
rs59889595	0.86[ASN][1000 genomes]
rs6439567	0.83[ASN][1000 genomes]
rs6439568	0.81[ASN][1000 genomes]
rs6789221	0.83[ASN][1000 genomes]
rs6810277	0.81[ASN][1000 genomes]
rs711963	0.83[ASN][1000 genomes]
rs711965	0.83[ASN][1000 genomes]
rs732448	0.83[ASN][1000 genomes]
rs7631497	0.83[ASN][1000 genomes]
rs7638885	0.83[ASN][1000 genomes]
rs824080	0.86[ASN][1000 genomes]
rs824095	0.86[ASN][1000 genomes]
rs931754	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135172400-135175000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:135174400-135175200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:135174400-135175200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:135174400-135175400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:135174600-135175200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:135174600-135175400	Enhancers	Brain Germinal Matrix	brain
7	chr3:135174600-135175600	Enhancers	Fetal Brain Male	brain
8	chr3:135174600-135178600	Weak transcription	Spleen	Spleen
9	chr3:135174800-135175000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:135174800-135175000	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr3:135174800-135175000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:135174800-135175200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:135174800-135175400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:135174800-135175600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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