Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1002893	0.97[ASN][1000 genomes]
rs10935170	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11706224	0.94[ASN][1000 genomes]
rs11709770	0.94[ASN][1000 genomes]
rs11712517	0.97[ASN][1000 genomes]
rs11712634	0.97[ASN][1000 genomes]
rs13089590	0.86[ASN][1000 genomes]
rs1393320	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1393321	0.97[ASN][1000 genomes]
rs1526932	0.94[ASN][1000 genomes]
rs1526933	0.89[ASN][1000 genomes]
rs1526942	0.97[ASN][1000 genomes]
rs16843013	0.92[ASN][1000 genomes]
rs1995394	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1995395	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36122071	0.97[ASN][1000 genomes]
rs6439567	0.97[ASN][1000 genomes]
rs6439568	0.94[ASN][1000 genomes]
rs6789221	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6810277	0.94[ASN][1000 genomes]
rs711963	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs711965	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs732448	0.97[ASN][1000 genomes]
rs7631497	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7638885	0.97[ASN][1000 genomes]
rs7652975	0.85[ASN][1000 genomes]
rs824095	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931754	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs824080	AMOTL2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135174600-135178600	Weak transcription	Spleen	Spleen
2	chr3:135177400-135178000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:135177400-135178600	Enhancers	Brain Germinal Matrix	brain

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