Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135217363..135219573-chr3:135220450..135222728,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1002893	1.00[ASN][1000 genomes]
rs10935170	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11706224	0.97[ASN][1000 genomes]
rs11709770	0.97[ASN][1000 genomes]
rs11712517	1.00[ASN][1000 genomes]
rs11712634	1.00[ASN][1000 genomes]
rs13089590	0.83[ASN][1000 genomes]
rs1393320	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393321	1.00[ASN][1000 genomes]
rs1526932	0.97[ASN][1000 genomes]
rs1526933	0.91[ASN][1000 genomes]
rs1526942	1.00[ASN][1000 genomes]
rs16843013	0.89[ASN][1000 genomes]
rs1995394	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995395	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36122071	1.00[ASN][1000 genomes]
rs6439567	1.00[ASN][1000 genomes]
rs6439568	0.97[ASN][1000 genomes]
rs6810277	0.97[ASN][1000 genomes]
rs711963	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs711965	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732448	1.00[ASN][1000 genomes]
rs7631497	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638885	1.00[ASN][1000 genomes]
rs7652975	0.87[ASN][1000 genomes]
rs824080	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs824095	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs931754	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv527433	chr3:135221504-135225249	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518089	chr3:135221504-135232994	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135210600-135222600	Weak transcription	Psoas Muscle	Psoas
2	chr3:135221400-135221800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:135221400-135221800	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:135221400-135222000	Enhancers	Fetal Brain Male	brain
5	chr3:135221400-135222400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:135221400-135223400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: