Variant report

Variant	rs13095880
Chromosome Location	chr3:141383306-141383307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2312502	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35805155	0.82[ASN][1000 genomes]
rs57116525	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141381800-141383600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:141382000-141383400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:141382000-141383400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:141382000-141384000	Enhancers	Ovary	ovary
5	chr3:141382200-141383400	Enhancers	Spleen	Spleen
6	chr3:141382200-141383600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:141382200-141383600	Enhancers	Fetal Stomach	stomach
8	chr3:141382400-141383400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:141382400-141383400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:141382400-141383400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:141382400-141383400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:141382400-141383600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:141382400-141383600	Enhancers	Placenta	Placenta
14	chr3:141382600-141383400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:141382800-141383400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:141382800-141383400	Enhancers	Colon Smooth Muscle	Colon
17	chr3:141382800-141383600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:141382800-141383600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:141382800-141383600	Enhancers	Adipose Nuclei	Adipose
20	chr3:141383000-141383400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr3:141383000-141383400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:141383200-141383600	Enhancers	Fetal Muscle Trunk	muscle
23	chr3:141383200-141383600	Enhancers	Fetal Muscle Leg	muscle

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