Variant report

Variant	rs2312502
Chromosome Location	chr3:141382765-141382766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13095880	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57116525	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141379600-141382800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:141379600-141382800	Weak transcription	HSMMtube	muscle
3	chr3:141379800-141382800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:141379800-141382800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:141379800-141382800	Weak transcription	Adipose Nuclei	Adipose
6	chr3:141379800-141382800	Weak transcription	Pancreas	Pancrea
7	chr3:141380200-141382800	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:141381800-141383600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:141382000-141383400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:141382000-141383400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:141382000-141384000	Enhancers	Ovary	ovary
12	chr3:141382200-141383400	Enhancers	Spleen	Spleen
13	chr3:141382200-141383600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:141382200-141383600	Enhancers	Fetal Stomach	stomach
15	chr3:141382400-141382800	Weak transcription	HSMM	muscle
16	chr3:141382400-141383200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:141382400-141383200	Enhancers	Fetal Lung	lung
18	chr3:141382400-141383400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:141382400-141383400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:141382400-141383400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:141382400-141383400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:141382400-141383600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:141382400-141383600	Enhancers	Placenta	Placenta
24	chr3:141382600-141382800	Enhancers	HepG2	liver
25	chr3:141382600-141383000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:141382600-141383000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr3:141382600-141383200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr3:141382600-141383200	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr3:141382600-141383200	Enhancers	Fetal Heart	heart
30	chr3:141382600-141383200	Enhancers	Fetal Intestine Small	intestine
31	chr3:141382600-141383400	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links