Variant report

Variant	rs57116525
Chromosome Location	chr3:141380000-141380001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:141379901-141380287	IMR90	lung:	n/a	n/a
2	CEBPB	chr3:141379875-141380708	HepG2	liver:	n/a	n/a
3	CEBPB	chr3:141379944-141380216	ECC-1	luminal epithelium:	n/a	n/a
4	CEBPB	chr3:141379923-141380632	A549	lung:	n/a	n/a
5	CEBPB	chr3:141379927-141380202	K562	blood:	n/a	n/a
6	STAT3	chr3:141379786-141380050	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141371342..141373237-chr3:141379412..141381256,2	MCF-7	breast:
2	chr3:141378535..141380158-chr3:141456715..141458247,2	MCF-7	breast:
3	chr3:141361177..141363053-chr3:141377745..141380110,2	MCF-7	breast:
4	chr3:141378869..141381397-chr3:141457213..141459259,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000242104	TF binding region
ENSG00000114125	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10935431	0.86[AFR][1000 genomes]
rs13060724	0.86[AFR][1000 genomes]
rs13095880	0.90[ASN][1000 genomes]
rs13096539	0.86[AFR][1000 genomes]
rs2312502	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6768509	0.86[AFR][1000 genomes]
rs6774863	0.86[AFR][1000 genomes]
rs71314592	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141378000-141380000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr3:141378200-141380200	Active TSS	Brain Anterior Caudate	brain
3	chr3:141379600-141380000	Flanking Active TSS	Colon Smooth Muscle	Colon
4	chr3:141379600-141380000	Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr3:141379600-141380800	Enhancers	Placenta	Placenta
6	chr3:141379600-141382200	Weak transcription	Spleen	Spleen
7	chr3:141379600-141382400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:141379600-141382800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:141379600-141382800	Weak transcription	HSMMtube	muscle
10	chr3:141379800-141380000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr3:141379800-141380000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr3:141379800-141380000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:141379800-141380000	Enhancers	Stomach Smooth Muscle	stomach
14	chr3:141379800-141380600	Bivalent Enhancer	HepG2	liver
15	chr3:141379800-141380800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:141379800-141380800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:141379800-141380800	Enhancers	Ovary	ovary
18	chr3:141379800-141381000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr3:141379800-141381400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr3:141379800-141382000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:141379800-141382200	Weak transcription	HSMM	muscle
22	chr3:141379800-141382400	Weak transcription	Fetal Lung	lung
23	chr3:141379800-141382600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:141379800-141382800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:141379800-141382800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:141379800-141382800	Weak transcription	Adipose Nuclei	Adipose
27	chr3:141379800-141382800	Weak transcription	Pancreas	Pancrea
28	chr3:141380000-141380200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr3:141380000-141380200	Active TSS	Colon Smooth Muscle	Colon
30	chr3:141380000-141382400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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