Variant report

Variant	rs71314592
Chromosome Location	chr3:141371408-141371409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141364236..141365914-chr3:141370366..141373121,2	MCF-7	breast:
2	chr3:141371342..141373237-chr3:141379412..141381256,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10935431	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13060724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065795	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13067655	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13072110	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13072855	0.83[ASN][1000 genomes]
rs13089727	0.99[ASN][1000 genomes]
rs13096539	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1994845	0.80[ASN][1000 genomes]
rs34380263	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4467426	0.80[ASN][1000 genomes]
rs4683407	0.80[ASN][1000 genomes]
rs4683616	0.80[ASN][1000 genomes]
rs57116525	0.86[AFR][1000 genomes]
rs58020426	0.81[ASN][1000 genomes]
rs59312699	0.80[ASN][1000 genomes]
rs6440024	0.80[ASN][1000 genomes]
rs6440025	0.80[ASN][1000 genomes]
rs6768509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774986	0.80[ASN][1000 genomes]
rs6784413	0.80[ASN][1000 genomes]
rs6784623	0.80[ASN][1000 genomes]
rs6805124	0.80[ASN][1000 genomes]
rs7618625	0.80[ASN][1000 genomes]
rs7627285	0.80[ASN][1000 genomes]
rs7639695	0.82[ASN][1000 genomes]
rs7642620	0.80[ASN][1000 genomes]
rs7650897	0.98[ASN][1000 genomes]
rs9289635	0.80[ASN][1000 genomes]
rs9289636	0.80[ASN][1000 genomes]
rs9289637	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141364400-141377600	Weak transcription	Aorta	Aorta
2	chr3:141366000-141372200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:141367600-141372200	Weak transcription	Fetal Stomach	stomach
4	chr3:141369600-141373400	Enhancers	Colon Smooth Muscle	Colon
5	chr3:141369800-141371600	Enhancers	K562	blood
6	chr3:141370600-141373000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:141370800-141373400	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:141371400-141371600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:141371400-141372000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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