Variant report

Variant	rs13096539
Chromosome Location	chr3:141376420-141376421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141367784..141370047-chr3:141375243..141376889,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10935431	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12632759	0.82[JPT][hapmap]
rs13060724	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13065795	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13067655	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13072110	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13072855	0.84[ASN][1000 genomes]
rs13089727	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1400685	0.85[JPT][hapmap]
rs1994845	0.86[JPT][hapmap]
rs2640019	0.85[JPT][hapmap]
rs295294	0.86[JPT][hapmap]
rs295296	0.86[JPT][hapmap]
rs295315	0.85[JPT][hapmap]
rs295317	0.95[JPT][hapmap]
rs34380263	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4467426	0.85[JPT][hapmap]
rs4683407	0.86[JPT][hapmap]
rs57116525	0.86[AFR][1000 genomes]
rs58020426	0.82[ASN][1000 genomes]
rs6440024	0.85[JPT][hapmap]
rs6440027	0.81[ASN][1000 genomes]
rs6768509	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6774863	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6784270	0.86[JPT][hapmap]
rs6784413	0.86[JPT][hapmap]
rs6791890	0.81[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs6805124	0.86[JPT][hapmap]
rs71314592	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7618625	0.85[JPT][hapmap]
rs7639695	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs7650897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs868767	0.81[JPT][hapmap]
rs868768	0.81[JPT][hapmap]
rs9841650	0.80[ASN][1000 genomes]
rs9861838	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv524429	chr3:141372391-141377330	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141364400-141377600	Weak transcription	Aorta	Aorta
2	chr3:141375200-141376800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:141375800-141376800	ZNF genes & repeats	Liver	Liver
4	chr3:141376000-141377200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:141376200-141376600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:141376200-141378200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:141376400-141376600	Bivalent Enhancer	NHDF-Ad	bronchial
8	chr3:141376400-141377200	Weak transcription	Placenta	Placenta
9	chr3:141376400-141377600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:141376400-141377600	Flanking Active TSS	Colon Smooth Muscle	Colon

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