Variant report

Variant	rs13072855
Chromosome Location	chr3:141344198-141344199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10935431	0.86[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs13060724	0.83[ASN][1000 genomes]
rs13065795	0.92[ASN][1000 genomes]
rs13067655	0.85[ASN][1000 genomes]
rs13072110	0.91[ASN][1000 genomes]
rs13089727	0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs13096539	0.84[ASN][1000 genomes]
rs1400685	0.85[CHD][hapmap]
rs2172472	0.81[ASN][1000 genomes]
rs2640019	0.84[JPT][hapmap]
rs2677420	0.81[ASN][1000 genomes]
rs295317	0.85[JPT][hapmap]
rs34380263	0.92[ASN][1000 genomes]
rs58020426	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6440024	0.85[CHD][hapmap]
rs6768509	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6774863	0.83[ASN][1000 genomes]
rs6791890	0.85[CHD][hapmap]
rs71314592	0.83[ASN][1000 genomes]
rs7618625	0.85[CHD][hapmap]
rs7650897	0.93[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141330400-141344600	Weak transcription	NHLF	lung
2	chr3:141330600-141344200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:141330600-141344200	Weak transcription	Ovary	ovary
4	chr3:141330800-141344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:141332000-141344600	Weak transcription	NHDF-Ad	bronchial
6	chr3:141332400-141344200	Weak transcription	HSMM	muscle
7	chr3:141332400-141344400	Weak transcription	Osteobl	bone
8	chr3:141332400-141345800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:141333600-141344200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:141335200-141344200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:141335200-141344200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:141336000-141344200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:141342600-141346000	Weak transcription	Fetal Intestine Small	intestine
14	chr3:141343200-141344400	Weak transcription	Fetal Intestine Large	intestine
15	chr3:141343600-141344200	Active TSS	Spleen	Spleen
16	chr3:141343600-141344800	Enhancers	HepG2	liver
17	chr3:141343800-141344200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:141343800-141344400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:141343800-141344600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr3:141343800-141345000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:141344000-141344200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:141344000-141345800	Enhancers	HMEC	breast

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