Variant report

Variant	rs2172472
Chromosome Location	chr3:141348682-141348683
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13065795	0.88[ASN][1000 genomes]
rs13072110	0.87[ASN][1000 genomes]
rs13072855	0.81[ASN][1000 genomes]
rs2131495	0.85[ASN][1000 genomes]
rs2176410	0.86[ASN][1000 genomes]
rs2249481	0.88[ASN][1000 genomes]
rs2640004	0.85[ASN][1000 genomes]
rs2640006	0.87[ASN][1000 genomes]
rs2640007	0.88[ASN][1000 genomes]
rs2640008	0.88[ASN][1000 genomes]
rs2677420	0.98[ASN][1000 genomes]
rs2971538	0.84[ASN][1000 genomes]
rs2971542	0.83[ASN][1000 genomes]
rs34380263	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141348000-141348800	Enhancers	K562	blood
2	chr3:141348600-141349000	Weak transcription	Fetal Intestine Large	intestine
3	chr3:141348600-141350200	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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