Variant report

Variant	rs2971538
Chromosome Location	chr3:141346621-141346622
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1011330	0.85[ASN][1000 genomes]
rs11711597	0.87[ASN][1000 genomes]
rs2131495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2172472	0.84[ASN][1000 genomes]
rs2176410	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2249481	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2249482	0.94[AFR][1000 genomes]
rs2271744	0.82[AMR][1000 genomes]
rs2640004	0.96[ASN][1000 genomes]
rs2640006	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2640007	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2640008	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2677420	0.84[ASN][1000 genomes]
rs2933862	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2971539	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2971540	0.87[ASN][1000 genomes]
rs2971542	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141345800-141347200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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