Variant report
| Variant | rs2677420 |
|---|---|
| Chromosome Location | chr3:141349381-141349382 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:141346002..141350339-chr3:141350922..141354438,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:45)
| rs_ID | r2[population] |
|---|---|
| rs10935431 | 0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs12632759 | 0.80[JPT][hapmap] |
| rs13065795 | 0.88[ASN][1000 genomes] |
| rs13067655 | 0.81[ASN][1000 genomes] |
| rs13072110 | 0.89[ASN][1000 genomes] |
| rs13072855 | 0.81[ASN][1000 genomes] |
| rs13089727 | 0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs1400685 | 0.85[JPT][hapmap] |
| rs1994845 | 0.85[JPT][hapmap] |
| rs2131495 | 0.85[ASN][1000 genomes] |
| rs2131499 | 0.81[AFR][1000 genomes] |
| rs2172472 | 0.98[ASN][1000 genomes] |
| rs2172474 | 0.81[AFR][1000 genomes] |
| rs2176410 | 0.84[ASN][1000 genomes] |
| rs2249481 | 0.86[ASN][1000 genomes] |
| rs2640004 | 0.83[ASN][1000 genomes] |
| rs2640006 | 0.85[ASN][1000 genomes] |
| rs2640007 | 0.86[ASN][1000 genomes] |
| rs2640008 | 0.86[ASN][1000 genomes] |
| rs2640014 | 0.82[AFR][1000 genomes] |
| rs2640019 | 0.89[JPT][hapmap] |
| rs2640020 | 0.82[LWK][hapmap] |
| rs2677419 | 0.82[AFR][1000 genomes] |
| rs295294 | 0.85[JPT][hapmap] |
| rs295296 | 0.85[JPT][hapmap] |
| rs295313 | 0.81[AFR][1000 genomes] |
| rs295315 | 0.86[CHD][hapmap];0.85[JPT][hapmap] |
| rs295317 | 0.89[JPT][hapmap] |
| rs2971538 | 0.84[ASN][1000 genomes] |
| rs2971542 | 0.81[ASN][1000 genomes] |
| rs34380263 | 0.88[ASN][1000 genomes] |
| rs4467426 | 0.83[JPT][hapmap] |
| rs4683407 | 0.85[JPT][hapmap] |
| rs6440018 | 0.81[AFR][1000 genomes] |
| rs6440024 | 0.85[JPT][hapmap] |
| rs6768509 | 0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs6784270 | 0.85[JPT][hapmap] |
| rs6784413 | 0.85[JPT][hapmap] |
| rs6791890 | 0.85[JPT][hapmap] |
| rs6805124 | 0.85[JPT][hapmap] |
| rs7618625 | 0.85[JPT][hapmap] |
| rs7639695 | 0.85[JPT][hapmap] |
| rs7650897 | 0.84[CHB][hapmap];0.94[JPT][hapmap] |
| rs868767 | 0.83[CHD][hapmap];0.80[JPT][hapmap] |
| rs868768 | 0.83[CHD][hapmap];0.80[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949709 | chr3:141295050-142178144 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:141348600-141350200 | Enhancers | Fetal Intestine Small | intestine |
| 2 | chr3:141348800-141349400 | Enhancers | Stomach Mucosa | stomach |
| 3 | chr3:141349000-141350000 | Enhancers | Fetal Intestine Large | intestine |
| 4 | chr3:141349200-141349600 | Enhancers | K562 | blood |
