Variant report

Variant	rs13098257
Chromosome Location	chr3:133316003-133316004
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133308371..133310394-chr3:133314281..133316837,2	K562	blood:
2	chr3:133307012..133310394-chr3:133313467..133316837,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10049041	1.00[JPT][hapmap]
rs11928489	1.00[JPT][hapmap]
rs12695595	0.82[JPT][hapmap]
rs13072780	1.00[JPT][hapmap]
rs1382700	0.82[JPT][hapmap]
rs2589271	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34469683	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7628914	0.85[CEU][hapmap]
rs9811349	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9820344	1.00[JPT][hapmap]
rs9838140	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9850362	1.00[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13098257	ANAPC13	cis	parietal	SCAN
rs13098257	TOPBP1	cis	cerebellum	SCAN
rs13098257	TOPBP1	cis	parietal	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133305800-133330600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:133306400-133342800	Weak transcription	Colonic Mucosa	Colon
3	chr3:133307000-133328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:133307200-133319800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:133307200-133335800	Weak transcription	Pancreas	Pancrea
6	chr3:133307400-133326400	Weak transcription	Right Ventricle	heart
7	chr3:133307400-133331200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:133307800-133319600	Weak transcription	Hela-S3	cervix
10	chr3:133308000-133324400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:133308000-133335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:133308200-133317600	Weak transcription	K562	blood
13	chr3:133308200-133326400	Weak transcription	Fetal Brain Male	brain
14	chr3:133308200-133326400	Weak transcription	Fetal Kidney	kidney
15	chr3:133308200-133326400	Weak transcription	Ovary	ovary
16	chr3:133308200-133326600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr3:133308200-133326600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:133308200-133327400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:133308200-133330600	Weak transcription	Gastric	stomach
20	chr3:133308200-133342200	Weak transcription	Brain Substantia Nigra	brain
21	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:133308400-133319600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:133308400-133320200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:133308400-133327400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:133308600-133316600	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:133308600-133317200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:133308600-133318000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr3:133308600-133318400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:133308600-133318400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:133308600-133323400	Weak transcription	Fetal Brain Female	brain
31	chr3:133308600-133323800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:133308600-133324600	Weak transcription	HepG2	liver
33	chr3:133308600-133325000	Weak transcription	Liver	Liver
34	chr3:133308600-133326000	Weak transcription	Fetal Lung	lung
35	chr3:133308600-133326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr3:133308600-133326400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:133308600-133326400	Weak transcription	Small Intestine	intestine
38	chr3:133308600-133327400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
41	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:133308800-133316600	Weak transcription	Dnd41	blood
44	chr3:133308800-133316800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:133308800-133316800	Weak transcription	Primary B cells from cord blood	blood
46	chr3:133308800-133317200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:133308800-133318400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:133308800-133319400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:133308800-133319400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:133308800-133319600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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