Variant report

Variant	rs9838140
Chromosome Location	chr3:133322279-133322280
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133321691..133323863-chr3:133333136..133335332,2	MCF-7	breast:
2	chr3:133319765..133322733-chr3:133322772..133325091,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1051772	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11928864	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13098257	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13315841	1.00[JPT][hapmap]
rs1348574	1.00[JPT][hapmap]
rs2589271	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2589276	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34469683	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58200773	0.82[ASN][1000 genomes]
rs6798570	1.00[JPT][hapmap]
rs7628914	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs7637748	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9289452	0.88[JPT][hapmap]
rs9289453	0.86[JPT][hapmap]
rs9810823	1.00[JPT][hapmap]
rs9811349	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9836356	1.00[JPT][hapmap]
rs9838963	0.82[ASN][1000 genomes]
rs9876306	0.82[ASN][1000 genomes]
rs9876463	1.00[JPT][hapmap]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133305800-133330600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:133306400-133342800	Weak transcription	Colonic Mucosa	Colon
3	chr3:133307000-133328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:133307200-133335800	Weak transcription	Pancreas	Pancrea
5	chr3:133307400-133326400	Weak transcription	Right Ventricle	heart
6	chr3:133307400-133331200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
8	chr3:133308000-133324400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:133308000-133335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:133308200-133326400	Weak transcription	Fetal Brain Male	brain
11	chr3:133308200-133326400	Weak transcription	Fetal Kidney	kidney
12	chr3:133308200-133326400	Weak transcription	Ovary	ovary
13	chr3:133308200-133326600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:133308200-133326600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:133308200-133327400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr3:133308200-133330600	Weak transcription	Gastric	stomach
17	chr3:133308200-133342200	Weak transcription	Brain Substantia Nigra	brain
18	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:133308400-133327400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:133308600-133323400	Weak transcription	Fetal Brain Female	brain
21	chr3:133308600-133323800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:133308600-133324600	Weak transcription	HepG2	liver
23	chr3:133308600-133325000	Weak transcription	Liver	Liver
24	chr3:133308600-133326000	Weak transcription	Fetal Lung	lung
25	chr3:133308600-133326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:133308600-133326400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:133308600-133326400	Weak transcription	Small Intestine	intestine
28	chr3:133308600-133327400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
31	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:133308800-133323600	Weak transcription	Fetal Intestine Large	intestine
34	chr3:133308800-133323800	Weak transcription	Placenta	Placenta
35	chr3:133308800-133325800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:133308800-133325800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr3:133308800-133326000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:133308800-133326000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:133308800-133326400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr3:133308800-133326400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr3:133308800-133326400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:133308800-133326400	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:133308800-133326600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:133308800-133326600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:133308800-133326600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr3:133308800-133327000	Weak transcription	Brain Anterior Caudate	brain
47	chr3:133308800-133328400	Weak transcription	Lung	lung
48	chr3:133309000-133326600	Weak transcription	Left Ventricle	heart
49	chr3:133309000-133326800	Weak transcription	Brain Germinal Matrix	brain
50	chr3:133309200-133322600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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