Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133373881..133375676-chr3:133393640..133395701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163781	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1051772	1.00[JPT][hapmap]
rs11928864	1.00[JPT][hapmap]
rs13315841	1.00[JPT][hapmap]
rs13325440	0.90[AMR][1000 genomes]
rs1348574	1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16840601	0.90[AMR][1000 genomes]
rs2099985	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34375330	0.90[AMR][1000 genomes]
rs34519945	0.90[AMR][1000 genomes]
rs34672862	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs36033747	0.90[AMR][1000 genomes]
rs6774104	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6779063	0.83[YRI][hapmap];0.93[AMR][1000 genomes]
rs6798570	1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs71317417	0.86[AMR][1000 genomes]
rs7628914	1.00[JPT][hapmap]
rs7637748	1.00[JPT][hapmap]
rs9289452	0.88[JPT][hapmap]
rs9289453	0.86[JPT][hapmap]
rs9810823	1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes]
rs9818377	0.93[AMR][1000 genomes]
rs9827019	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9836356	1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes]
rs9838140	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9847690	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9852403	0.93[AMR][1000 genomes]
rs9863830	0.90[AMR][1000 genomes]
rs9865536	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9871504	0.90[AMR][1000 genomes]
rs9876463	1.00[JPT][hapmap]
rs9881110	0.90[AMR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133393200-133395800	Enhancers	GM12878-XiMat	blood
2	chr3:133393800-133395800	Enhancers	Adipose Nuclei	Adipose
3	chr3:133393800-133396200	Weak transcription	Right Atrium	heart
4	chr3:133393800-133406800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:133394000-133399600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:133394600-133395800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:133394600-133395800	Flanking Active TSS	HepG2	liver
8	chr3:133395200-133395800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:133395200-133396000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:133395400-133395800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:133395400-133395800	Enhancers	Brain Hippocampus Middle	brain
12	chr3:133395400-133396400	Enhancers	Liver	Liver
13	chr3:133395600-133395800	Bivalent Enhancer	Thymus	Thymus

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