Variant report

Variant	rs9871504
Chromosome Location	chr3:133351675-133351676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:133351654-133351698	MCF-7	breast:	n/a	n/a
2	POLR2A	chr3:133351637-133351813	HepG2	liver:	n/a	n/a
3	POLR2A	chr3:133351398-133352017	K562	blood:	n/a	n/a
4	POLR2A	chr3:133351631-133351778	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
TOPBP1	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10049041	0.93[EUR][1000 genomes]
rs1051772	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11919027	0.93[EUR][1000 genomes]
rs11923695	0.91[EUR][1000 genomes]
rs11928489	0.93[EUR][1000 genomes]
rs11928864	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12695595	0.93[EUR][1000 genomes]
rs13072634	0.93[EUR][1000 genomes]
rs13096215	0.93[EUR][1000 genomes]
rs13098235	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13315841	0.96[ASN][1000 genomes]
rs13325440	0.93[AMR][1000 genomes]
rs1348574	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16840601	0.93[AMR][1000 genomes]
rs2099985	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2589276	0.90[AMR][1000 genomes]
rs34239013	0.96[ASN][1000 genomes]
rs34375330	0.93[AMR][1000 genomes]
rs34519945	0.93[AMR][1000 genomes]
rs34664124	0.96[ASN][1000 genomes]
rs34672862	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34736000	0.96[ASN][1000 genomes]
rs34844086	0.93[EUR][1000 genomes]
rs35717736	0.96[ASN][1000 genomes]
rs35824665	0.91[EUR][1000 genomes]
rs36033747	0.93[AMR][1000 genomes]
rs55633281	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57447001	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58200773	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60695717	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6774104	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6779063	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67852078	0.93[EUR][1000 genomes]
rs6798570	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71317413	0.91[EUR][1000 genomes]
rs71317417	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628914	0.86[ASN][1000 genomes]
rs7637748	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9810823	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818377	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9818392	0.90[ASN][1000 genomes]
rs9824964	0.93[EUR][1000 genomes]
rs9827019	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9836356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838963	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9839156	0.86[ASN][1000 genomes]
rs9841141	0.93[EUR][1000 genomes]
rs9847690	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9850362	0.93[EUR][1000 genomes]
rs9852403	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9857351	0.93[EUR][1000 genomes]
rs9863830	0.93[AMR][1000 genomes]
rs9865536	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9876306	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9876463	0.96[ASN][1000 genomes]
rs9881110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:133316600-133377600	Strong transcription	Dnd41	blood
4	chr3:133316600-133378000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:133317000-133378200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:133317200-133378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:133318400-133378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:133319000-133363800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:133322200-133378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:133322600-133378800	Weak transcription	Stomach Mucosa	stomach
11	chr3:133323200-133378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:133323200-133378400	Strong transcription	Fetal Thymus	thymus
13	chr3:133323200-133378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:133323400-133378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:133323600-133377800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr3:133323800-133378800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:133324200-133378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:133325200-133352800	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:133325200-133353000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:133327000-133362400	Weak transcription	Small Intestine	intestine
21	chr3:133328000-133356400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:133329200-133358400	Weak transcription	Fetal Heart	heart
23	chr3:133329400-133358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:133331200-133352000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:133332200-133378600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:133333400-133378000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:133334000-133359200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:133334200-133378400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr3:133334400-133368800	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr3:133334600-133352800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:133334600-133363200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:133334800-133354400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:133334800-133367200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:133335200-133353000	Strong transcription	Placenta	Placenta
35	chr3:133337400-133380000	Weak transcription	Pancreas	Pancrea
36	chr3:133338400-133359000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr3:133338600-133352800	Strong transcription	Fetal Muscle Leg	muscle
38	chr3:133338600-133368600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr3:133338800-133363400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:133339600-133356200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:133339800-133352600	Strong transcription	Brain Germinal Matrix	brain
42	chr3:133339800-133378000	Strong transcription	Primary B cells from cord blood	blood
43	chr3:133340200-133380000	Weak transcription	Right Ventricle	heart
44	chr3:133341200-133378800	Strong transcription	Primary B cells from peripheral blood	blood
45	chr3:133342400-133355600	Weak transcription	Fetal Kidney	kidney
46	chr3:133342800-133361200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr3:133343200-133355400	Weak transcription	Brain Substantia Nigra	brain
48	chr3:133344600-133352600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr3:133344800-133359000	Strong transcription	HSMM	muscle
50	chr3:133345000-133364400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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