Variant report

Variant	rs13072634
Chromosome Location	chr3:133296739-133296740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133234670..133236418-chr3:133296104..133297868,2	K562	blood:
2	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
3	chr3:133284123..133286428-chr3:133295260..133297660,2	K562	blood:
4	chr3:133182317..133184120-chr3:133296724..133299109,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249993	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10049041	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919027	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923695	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928489	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695595	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096215	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318046	0.92[ASN][1000 genomes]
rs13321896	0.92[ASN][1000 genomes]
rs1348574	0.90[EUR][1000 genomes]
rs2099985	0.83[EUR][1000 genomes]
rs34062652	0.92[ASN][1000 genomes]
rs34672862	0.83[EUR][1000 genomes]
rs34844086	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35824665	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55633281	0.80[EUR][1000 genomes]
rs57447001	0.84[EUR][1000 genomes]
rs60695717	0.82[EUR][1000 genomes]
rs6774104	0.88[EUR][1000 genomes]
rs6779063	0.90[EUR][1000 genomes]
rs67852078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798570	0.88[EUR][1000 genomes]
rs71317412	0.92[ASN][1000 genomes]
rs71317413	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71317414	0.92[ASN][1000 genomes]
rs71317417	0.93[EUR][1000 genomes]
rs9810823	0.84[EUR][1000 genomes]
rs9818377	0.83[EUR][1000 genomes]
rs9820344	0.92[ASN][1000 genomes]
rs9824964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827019	0.88[EUR][1000 genomes]
rs9830529	0.92[ASN][1000 genomes]
rs9836356	0.90[EUR][1000 genomes]
rs9841141	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847690	0.83[EUR][1000 genomes]
rs9850362	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852403	0.83[EUR][1000 genomes]
rs9857351	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865536	0.88[EUR][1000 genomes]
rs9871504	0.93[EUR][1000 genomes]
rs9881110	0.93[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133293600-133297600	Transcr. at gene 5' and 3'	HSMM	muscle
2	chr3:133293600-133298400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
3	chr3:133293800-133296800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:133294200-133296800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:133294200-133296800	Weak transcription	Gastric	stomach
6	chr3:133294200-133297000	Weak transcription	Esophagus	oesophagus
7	chr3:133294200-133298600	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr3:133294200-133301000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:133294200-133302200	Weak transcription	Pancreas	Pancrea
10	chr3:133294200-133306000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:133294400-133298200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
12	chr3:133294400-133300200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:133294600-133297400	Strong transcription	Placenta	Placenta
14	chr3:133294600-133308800	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr3:133294800-133298600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:133294800-133309800	Strong transcription	Fetal Muscle Trunk	muscle
17	chr3:133295000-133297200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:133295200-133297200	Weak transcription	Stomach Mucosa	stomach
19	chr3:133295200-133298200	Genic enhancers	Primary B cells from cord blood	blood
20	chr3:133295200-133298200	Genic enhancers	HepG2	liver
21	chr3:133295200-133308400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:133295400-133296800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:133295400-133296800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:133295400-133296800	Weak transcription	Aorta	Aorta
25	chr3:133295400-133296800	Weak transcription	Fetal Brain Male	brain
26	chr3:133295400-133296800	Strong transcription	Fetal Muscle Leg	muscle
27	chr3:133295400-133296800	Weak transcription	Lung	lung
28	chr3:133295400-133297000	Weak transcription	Fetal Kidney	kidney
29	chr3:133295400-133297000	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:133295400-133297200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:133295400-133297200	Weak transcription	Brain Germinal Matrix	brain
32	chr3:133295400-133297200	Genic enhancers	Dnd41	blood
33	chr3:133295400-133297400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:133295400-133297400	Weak transcription	Fetal Brain Female	brain
35	chr3:133295400-133297800	Genic enhancers	Left Ventricle	heart
36	chr3:133295400-133298000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr3:133295400-133298200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:133295400-133298200	Genic enhancers	Liver	Liver
39	chr3:133295400-133298200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr3:133295400-133298200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
41	chr3:133295400-133298400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:133295400-133298600	Genic enhancers	Primary monocytes fromperipheralblood	blood
43	chr3:133295400-133298800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr3:133295400-133300400	Weak transcription	Colonic Mucosa	Colon
45	chr3:133295400-133301000	Weak transcription	Ovary	ovary
46	chr3:133295400-133301200	Weak transcription	Spleen	Spleen
47	chr3:133295400-133301400	Genic enhancers	Primary T cells fromperipheralblood	blood
48	chr3:133295400-133302400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
49	chr3:133295400-133308800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:133295400-133308800	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links