Variant report

Variant	rs11919027
Chromosome Location	chr3:133298577-133298578
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133297624..133299633-chr3:133303195..133305687,2	MCF-7	breast:
2	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
3	chr3:133182317..133184120-chr3:133296724..133299109,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249993	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10049041	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923695	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928489	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695595	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072634	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096215	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318046	0.92[ASN][1000 genomes]
rs13321896	0.92[ASN][1000 genomes]
rs1348574	0.90[EUR][1000 genomes]
rs2099985	0.83[EUR][1000 genomes]
rs34062652	0.92[ASN][1000 genomes]
rs34672862	0.83[EUR][1000 genomes]
rs34844086	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35824665	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55633281	0.80[EUR][1000 genomes]
rs57447001	0.84[EUR][1000 genomes]
rs60695717	0.82[EUR][1000 genomes]
rs6774104	0.88[EUR][1000 genomes]
rs6779063	0.90[EUR][1000 genomes]
rs67852078	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798570	0.88[EUR][1000 genomes]
rs71317412	0.92[ASN][1000 genomes]
rs71317413	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71317414	0.92[ASN][1000 genomes]
rs71317417	0.93[EUR][1000 genomes]
rs9810823	0.84[EUR][1000 genomes]
rs9818377	0.83[EUR][1000 genomes]
rs9820344	0.92[ASN][1000 genomes]
rs9824964	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827019	0.88[EUR][1000 genomes]
rs9830529	0.92[ASN][1000 genomes]
rs9836356	0.90[EUR][1000 genomes]
rs9841141	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847690	0.83[EUR][1000 genomes]
rs9850362	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852403	0.83[EUR][1000 genomes]
rs9857351	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865536	0.88[EUR][1000 genomes]
rs9871504	0.93[EUR][1000 genomes]
rs9881110	0.93[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133294200-133298600	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr3:133294200-133301000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:133294200-133302200	Weak transcription	Pancreas	Pancrea
4	chr3:133294200-133306000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:133294400-133300200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:133294600-133308800	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr3:133294800-133298600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:133294800-133309800	Strong transcription	Fetal Muscle Trunk	muscle
9	chr3:133295200-133308400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:133295400-133298600	Genic enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:133295400-133298800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:133295400-133300400	Weak transcription	Colonic Mucosa	Colon
13	chr3:133295400-133301000	Weak transcription	Ovary	ovary
14	chr3:133295400-133301200	Weak transcription	Spleen	Spleen
15	chr3:133295400-133301400	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr3:133295400-133302400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:133295400-133308800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:133295400-133308800	Strong transcription	Fetal Intestine Large	intestine
19	chr3:133295400-133309200	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:133295400-133309200	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:133295600-133298600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:133295600-133298800	Genic enhancers	Fetal Thymus	thymus
23	chr3:133295600-133301600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:133295600-133308800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:133295600-133309200	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:133295600-133309200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:133295600-133309400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:133295600-133310400	Strong transcription	Fetal Stomach	stomach
29	chr3:133296200-133298800	Strong transcription	H9 Cell Line	embryonic stem cell
30	chr3:133296200-133299000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:133296200-133299000	Strong transcription	NH-A	brain
32	chr3:133296400-133299600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:133296600-133298600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:133296600-133298600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr3:133296600-133298600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr3:133296800-133298600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr3:133296800-133298600	Strong transcription	Lung	lung
38	chr3:133297000-133298600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
39	chr3:133297000-133298600	Strong transcription	Fetal Kidney	kidney
40	chr3:133297400-133298600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr3:133297400-133298600	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr3:133297400-133298600	Genic enhancers	Placenta	Placenta
43	chr3:133297400-133301600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr3:133297600-133298600	Strong transcription	Gastric	stomach
45	chr3:133297600-133298600	Strong transcription	NHLF	lung
46	chr3:133297600-133301000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr3:133297600-133302000	Weak transcription	Right Ventricle	heart
48	chr3:133297600-133302200	Weak transcription	Brain Anterior Caudate	brain
49	chr3:133297600-133302400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr3:133297600-133308400	Strong transcription	Rectal Mucosa Donor 31	rectum

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