Variant report

Variant	rs71317417
Chromosome Location	chr3:133331230-133331231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:133331200-133331350	GM12871	blood:	n/a	n/a

Variant related genes	Relation type
TOPBP1	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10049041	0.93[EUR][1000 genomes]
rs1051772	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11919027	0.93[EUR][1000 genomes]
rs11923695	0.91[EUR][1000 genomes]
rs11928489	0.93[EUR][1000 genomes]
rs11928864	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12695595	0.93[EUR][1000 genomes]
rs13072634	0.93[EUR][1000 genomes]
rs13096215	0.93[EUR][1000 genomes]
rs13098235	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13315841	0.96[ASN][1000 genomes]
rs13325440	0.89[AMR][1000 genomes]
rs1348574	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16840601	0.89[AMR][1000 genomes]
rs2099985	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2589276	0.86[AMR][1000 genomes]
rs34239013	0.96[ASN][1000 genomes]
rs34375330	0.89[AMR][1000 genomes]
rs34519945	0.89[AMR][1000 genomes]
rs34664124	0.96[ASN][1000 genomes]
rs34672862	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34736000	0.96[ASN][1000 genomes]
rs34844086	0.93[EUR][1000 genomes]
rs35717736	0.96[ASN][1000 genomes]
rs35824665	0.91[EUR][1000 genomes]
rs36033747	0.89[AMR][1000 genomes]
rs55633281	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57447001	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58200773	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60695717	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6774104	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6779063	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67852078	0.93[EUR][1000 genomes]
rs6798570	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71317413	0.91[EUR][1000 genomes]
rs7628914	0.86[ASN][1000 genomes]
rs7637748	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9810823	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818377	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9818392	0.90[ASN][1000 genomes]
rs9824964	0.93[EUR][1000 genomes]
rs9827019	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9836356	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838963	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9839156	0.86[ASN][1000 genomes]
rs9841141	0.93[EUR][1000 genomes]
rs9847690	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9850362	0.93[EUR][1000 genomes]
rs9852403	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9857351	0.93[EUR][1000 genomes]
rs9863830	0.89[AMR][1000 genomes]
rs9865536	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9871504	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876306	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9876463	0.96[ASN][1000 genomes]
rs9881110	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133306400-133342800	Weak transcription	Colonic Mucosa	Colon
2	chr3:133307200-133335800	Weak transcription	Pancreas	Pancrea
3	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
4	chr3:133308000-133335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:133308200-133342200	Weak transcription	Brain Substantia Nigra	brain
6	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
9	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:133310800-133335000	Weak transcription	Aorta	Aorta
12	chr3:133310800-133349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:133314200-133335400	Weak transcription	NHLF	lung
14	chr3:133314800-133335800	Weak transcription	HSMMtube	muscle
15	chr3:133314800-133349200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:133314800-133351600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:133316600-133377600	Strong transcription	Dnd41	blood
18	chr3:133316600-133378000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:133317000-133378200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr3:133317200-133378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:133318400-133378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:133319000-133363800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:133322200-133378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:133322600-133378800	Weak transcription	Stomach Mucosa	stomach
25	chr3:133323200-133333200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:133323200-133341000	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:133323200-133378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:133323200-133378400	Strong transcription	Fetal Thymus	thymus
29	chr3:133323200-133378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:133323400-133378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:133323600-133331400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr3:133323600-133377800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr3:133323800-133331400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:133323800-133331800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:133323800-133332000	Strong transcription	Placenta	Placenta
36	chr3:133323800-133332200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:133323800-133378800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr3:133324200-133378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:133324400-133338600	Strong transcription	Primary B cells from peripheral blood	blood
40	chr3:133325000-133345000	Weak transcription	Psoas Muscle	Psoas
41	chr3:133325200-133332400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr3:133325200-133352800	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:133325200-133353000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:133325400-133331400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr3:133325400-133332400	Strong transcription	Duodenum Mucosa	Duodenum
46	chr3:133325400-133332600	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr3:133325400-133348200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:133325800-133331400	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:133325800-133331400	Strong transcription	HMEC	breast
50	chr3:133325800-133331600	Strong transcription	Primary hematopoietic stem cells	blood

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