Variant report

Variant	rs13098235
Chromosome Location	chr3:133315965-133315966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133308371..133310394-chr3:133314281..133316837,2	K562	blood:
2	chr3:133307012..133310394-chr3:133313467..133316837,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1051772	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11928864	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13325440	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1348574	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16840601	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34375330	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34519945	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36033747	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58200773	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6774104	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6779063	0.82[EUR][1000 genomes]
rs6798570	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71317417	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7637748	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9810823	0.83[AMR][1000 genomes]
rs9827019	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9836356	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9838963	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9863830	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9865536	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9871504	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9876306	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9881110	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133305800-133330600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:133306400-133342800	Weak transcription	Colonic Mucosa	Colon
3	chr3:133307000-133328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:133307200-133319800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:133307200-133335800	Weak transcription	Pancreas	Pancrea
6	chr3:133307400-133326400	Weak transcription	Right Ventricle	heart
7	chr3:133307400-133331200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:133307800-133319600	Weak transcription	Hela-S3	cervix
10	chr3:133308000-133324400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:133308000-133335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:133308200-133317600	Weak transcription	K562	blood
13	chr3:133308200-133326400	Weak transcription	Fetal Brain Male	brain
14	chr3:133308200-133326400	Weak transcription	Fetal Kidney	kidney
15	chr3:133308200-133326400	Weak transcription	Ovary	ovary
16	chr3:133308200-133326600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr3:133308200-133326600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:133308200-133327400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:133308200-133330600	Weak transcription	Gastric	stomach
20	chr3:133308200-133342200	Weak transcription	Brain Substantia Nigra	brain
21	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:133308400-133319600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:133308400-133320200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:133308400-133327400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:133308600-133316600	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:133308600-133317200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:133308600-133318000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr3:133308600-133318400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:133308600-133318400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:133308600-133323400	Weak transcription	Fetal Brain Female	brain
31	chr3:133308600-133323800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:133308600-133324600	Weak transcription	HepG2	liver
33	chr3:133308600-133325000	Weak transcription	Liver	Liver
34	chr3:133308600-133326000	Weak transcription	Fetal Lung	lung
35	chr3:133308600-133326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr3:133308600-133326400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:133308600-133326400	Weak transcription	Small Intestine	intestine
38	chr3:133308600-133327400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
41	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:133308800-133316600	Weak transcription	Dnd41	blood
44	chr3:133308800-133316800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:133308800-133316800	Weak transcription	Primary B cells from cord blood	blood
46	chr3:133308800-133317200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:133308800-133318400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:133308800-133319400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:133308800-133319400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:133308800-133319600	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links