Variant report

Variant	rs6774104
Chromosome Location	chr3:133383854-133383855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr3:133383717-133383988	K562	blood:	n/a	n/a
2	POLR2A	chr3:133383727-133383927	K562	blood:	n/a	n/a
3	CTCF	chr3:133383840-133383990	HBMEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
TOPBP1	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10049041	0.88[EUR][1000 genomes]
rs1051772	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11919027	0.88[EUR][1000 genomes]
rs11923695	0.86[EUR][1000 genomes]
rs11928489	0.88[EUR][1000 genomes]
rs11928864	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12695595	0.88[EUR][1000 genomes]
rs13072634	0.88[EUR][1000 genomes]
rs13096215	0.88[EUR][1000 genomes]
rs13098235	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13315841	0.90[ASN][1000 genomes]
rs13325440	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1348574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16840601	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2099985	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2589276	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs34239013	0.90[ASN][1000 genomes]
rs34375330	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34519945	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34664124	0.90[ASN][1000 genomes]
rs34672862	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34736000	0.90[ASN][1000 genomes]
rs34844086	0.88[EUR][1000 genomes]
rs35717736	0.90[ASN][1000 genomes]
rs35824665	0.86[EUR][1000 genomes]
rs35853116	0.83[ASN][1000 genomes]
rs36033747	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55633281	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57447001	0.88[AMR][1000 genomes]
rs58200773	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60695717	0.88[AMR][1000 genomes]
rs6779063	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67852078	0.88[EUR][1000 genomes]
rs6798570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71317413	0.86[EUR][1000 genomes]
rs71317417	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71331727	0.83[ASN][1000 genomes]
rs71331728	0.83[ASN][1000 genomes]
rs7628914	0.93[ASN][1000 genomes]
rs7637748	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9289452	0.83[ASN][1000 genomes]
rs9289453	0.83[ASN][1000 genomes]
rs9810823	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815273	0.83[ASN][1000 genomes]
rs9818377	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9818392	0.83[ASN][1000 genomes]
rs9824964	0.88[EUR][1000 genomes]
rs9827019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9838963	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9839156	0.93[ASN][1000 genomes]
rs9841141	0.88[EUR][1000 genomes]
rs9847690	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9850362	0.88[EUR][1000 genomes]
rs9852403	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9852789	0.83[ASN][1000 genomes]
rs9857351	0.88[EUR][1000 genomes]
rs9863830	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9865536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871504	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9876306	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9876463	0.90[ASN][1000 genomes]
rs9881110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133381400-133392400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:133381600-133386200	Weak transcription	Fetal Stomach	stomach
3	chr3:133381600-133387200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:133381600-133387200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:133381600-133387400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:133381600-133387400	Weak transcription	Fetal Heart	heart
7	chr3:133381600-133388800	Weak transcription	Gastric	stomach
8	chr3:133382000-133387600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:133382000-133387600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:133382600-133387600	Weak transcription	NH-A	brain
11	chr3:133382800-133384400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:133382800-133384800	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:133382800-133385600	Weak transcription	Primary T cells from cord blood	blood
14	chr3:133382800-133386200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:133382800-133386400	Weak transcription	Fetal Thymus	thymus
16	chr3:133382800-133386600	Weak transcription	Pancreas	Pancrea
17	chr3:133382800-133387200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:133382800-133387200	Weak transcription	Placenta	Placenta
19	chr3:133382800-133387200	Weak transcription	Right Atrium	heart
20	chr3:133382800-133387400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:133382800-133387400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:133382800-133387400	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:133382800-133387600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:133382800-133387600	Weak transcription	Fetal Intestine Large	intestine
25	chr3:133382800-133388400	Enhancers	HepG2	liver
26	chr3:133382800-133390200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:133382800-133392800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:133383000-133386800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:133383000-133387400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr3:133383000-133389000	Weak transcription	Fetal Intestine Small	intestine
31	chr3:133383000-133389000	Weak transcription	A549	lung
32	chr3:133383200-133387400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:133383400-133384000	Enhancers	K562	blood
34	chr3:133383600-133386400	Weak transcription	Liver	Liver

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