Variant report

Variant	rs2099985
Chromosome Location	chr3:133398690-133398691
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10049041	0.83[EUR][1000 genomes]
rs1051772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs11919027	0.83[EUR][1000 genomes]
rs11923695	0.82[EUR][1000 genomes]
rs11928489	0.83[EUR][1000 genomes]
rs11928864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs12695595	0.83[EUR][1000 genomes]
rs13072634	0.83[EUR][1000 genomes]
rs13096215	0.83[EUR][1000 genomes]
rs13315841	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13325440	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1348574	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16840601	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2589276	0.82[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34239013	0.86[ASN][1000 genomes]
rs34375330	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34519945	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34664124	0.86[ASN][1000 genomes]
rs34672862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34736000	0.86[ASN][1000 genomes]
rs34844086	0.83[EUR][1000 genomes]
rs35717736	0.86[ASN][1000 genomes]
rs35824665	0.82[EUR][1000 genomes]
rs35853116	0.86[ASN][1000 genomes]
rs36033747	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55633281	0.85[AMR][1000 genomes]
rs57447001	0.85[AMR][1000 genomes]
rs58200773	0.82[AMR][1000 genomes]
rs60695717	0.85[AMR][1000 genomes]
rs6774104	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6779063	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67852078	0.83[EUR][1000 genomes]
rs6798570	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71317413	0.82[EUR][1000 genomes]
rs71317417	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71331727	0.86[ASN][1000 genomes]
rs71331728	0.86[ASN][1000 genomes]
rs7628914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7637748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs9289452	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs9289453	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9810823	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9815273	0.86[ASN][1000 genomes]
rs9818377	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818392	0.80[ASN][1000 genomes]
rs9824964	0.83[EUR][1000 genomes]
rs9827019	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9836356	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9838140	1.00[JPT][hapmap]
rs9838963	0.86[AMR][1000 genomes]
rs9839156	0.96[ASN][1000 genomes]
rs9841141	0.83[EUR][1000 genomes]
rs9847690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850362	0.83[EUR][1000 genomes]
rs9852403	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852789	0.86[ASN][1000 genomes]
rs9857351	0.83[EUR][1000 genomes]
rs9863830	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9865536	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9871504	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9876306	0.86[AMR][1000 genomes]
rs9876463	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9881110	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133393800-133406800	Weak transcription	Brain Substantia Nigra	brain
2	chr3:133394000-133399600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:133396200-133398800	Weak transcription	HepG2	liver

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