Variant report

Variant	rs6779063
Chromosome Location	chr3:133372919-133372920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133371314..133375654-chr3:133378564..133381849,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDV3-2	chr3:133372474-133372980	NONHSAT092194

Variant related genes	Relation type
ENSG00000163781	Chromatin interaction
ENSG00000242337	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10049041	0.90[EUR][1000 genomes]
rs1051772	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11919027	0.90[EUR][1000 genomes]
rs11923695	0.88[EUR][1000 genomes]
rs11928489	0.90[EUR][1000 genomes]
rs11928864	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12695595	0.90[EUR][1000 genomes]
rs13072634	0.90[EUR][1000 genomes]
rs13096215	0.90[EUR][1000 genomes]
rs13098235	0.82[EUR][1000 genomes]
rs13315841	0.96[ASN][1000 genomes]
rs13325440	0.89[AMR][1000 genomes]
rs1348574	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16840601	0.89[AMR][1000 genomes]
rs2099985	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2589276	0.83[YRI][hapmap];0.93[AMR][1000 genomes]
rs34239013	0.96[ASN][1000 genomes]
rs34375330	0.89[AMR][1000 genomes]
rs34519945	0.89[AMR][1000 genomes]
rs34664124	0.96[ASN][1000 genomes]
rs34672862	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34736000	0.96[ASN][1000 genomes]
rs34844086	0.90[EUR][1000 genomes]
rs35717736	0.96[ASN][1000 genomes]
rs35824665	0.88[EUR][1000 genomes]
rs36033747	0.89[AMR][1000 genomes]
rs55633281	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57447001	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58200773	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60695717	0.85[AMR][1000 genomes]
rs6774104	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67852078	0.90[EUR][1000 genomes]
rs6798570	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71317413	0.88[EUR][1000 genomes]
rs71317417	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628914	0.86[ASN][1000 genomes]
rs7637748	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9810823	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818377	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9818392	0.90[ASN][1000 genomes]
rs9824964	0.90[EUR][1000 genomes]
rs9827019	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9836356	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838963	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9839156	0.86[ASN][1000 genomes]
rs9841141	0.90[EUR][1000 genomes]
rs9847690	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9850362	0.90[EUR][1000 genomes]
rs9852403	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9857351	0.90[EUR][1000 genomes]
rs9863830	0.89[AMR][1000 genomes]
rs9865536	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9871504	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876306	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9876463	0.96[ASN][1000 genomes]
rs9881110	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133316600-133377600	Strong transcription	Dnd41	blood
2	chr3:133316600-133378000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:133317000-133378200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr3:133317200-133378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:133318400-133378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:133322200-133378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:133322600-133378800	Weak transcription	Stomach Mucosa	stomach
8	chr3:133323200-133378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:133323200-133378400	Strong transcription	Fetal Thymus	thymus
10	chr3:133323200-133378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:133323400-133378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:133323600-133377800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr3:133323800-133378800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:133324200-133378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:133332200-133378600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:133333400-133378000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr3:133334200-133378400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:133337400-133380000	Weak transcription	Pancreas	Pancrea
19	chr3:133339800-133378000	Strong transcription	Primary B cells from cord blood	blood
20	chr3:133340200-133380000	Weak transcription	Right Ventricle	heart
21	chr3:133341200-133378800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr3:133345600-133380000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:133345600-133380000	Weak transcription	Psoas Muscle	Psoas
24	chr3:133349600-133378200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:133352400-133378200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:133352600-133380000	Weak transcription	Esophagus	oesophagus
27	chr3:133352600-133380000	Weak transcription	Gastric	stomach
28	chr3:133352600-133380000	Weak transcription	Spleen	Spleen
29	chr3:133353000-133379800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:133353800-133378200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:133359000-133374800	Weak transcription	Fetal Heart	heart
32	chr3:133359600-133377800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:133359600-133380000	Weak transcription	Aorta	Aorta
34	chr3:133360800-133377200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:133361000-133373800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:133361800-133374200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:133362000-133374600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr3:133362200-133374800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr3:133363000-133380000	Weak transcription	Small Intestine	intestine
40	chr3:133364000-133374800	Weak transcription	HSMMtube	muscle
41	chr3:133364000-133379200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr3:133364000-133379800	Weak transcription	Brain Angular Gyrus	brain
43	chr3:133364200-133373200	Weak transcription	NHLF	lung
44	chr3:133364200-133378800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:133364800-133379400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:133365200-133377000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:133365200-133378200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr3:133365200-133379000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr3:133365400-133374600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr3:133365600-133380200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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