Variant report

Variant	rs9841141
Chromosome Location	chr3:133310621-133310622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133291215..133294637-chr3:133308784..133312261,4	K562	blood:
2	chr3:133292695..133294577-chr3:133308068..133311050,2	K562	blood:

Variant related genes	Relation type
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10049041	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923695	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928489	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072634	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096215	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318046	0.92[ASN][1000 genomes]
rs13321896	0.92[ASN][1000 genomes]
rs1348574	0.90[EUR][1000 genomes]
rs2099985	0.83[EUR][1000 genomes]
rs34062652	0.92[ASN][1000 genomes]
rs34672862	0.83[EUR][1000 genomes]
rs34844086	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35824665	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55633281	0.80[EUR][1000 genomes]
rs57447001	0.84[EUR][1000 genomes]
rs60695717	0.82[EUR][1000 genomes]
rs6774104	0.88[EUR][1000 genomes]
rs6779063	0.90[EUR][1000 genomes]
rs67852078	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798570	0.88[EUR][1000 genomes]
rs71317412	0.92[ASN][1000 genomes]
rs71317413	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71317414	0.92[ASN][1000 genomes]
rs71317417	0.93[EUR][1000 genomes]
rs9810823	0.84[EUR][1000 genomes]
rs9818377	0.83[EUR][1000 genomes]
rs9820344	0.92[ASN][1000 genomes]
rs9824964	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827019	0.88[EUR][1000 genomes]
rs9830529	0.92[ASN][1000 genomes]
rs9836356	0.90[EUR][1000 genomes]
rs9847690	0.83[EUR][1000 genomes]
rs9850362	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852403	0.83[EUR][1000 genomes]
rs9857351	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865536	0.88[EUR][1000 genomes]
rs9871504	0.93[EUR][1000 genomes]
rs9881110	0.93[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133303200-133310800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:133305800-133330600	Weak transcription	Fetal Intestine Small	intestine
3	chr3:133306400-133342800	Weak transcription	Colonic Mucosa	Colon
4	chr3:133307000-133328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:133307200-133319800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:133307200-133335800	Weak transcription	Pancreas	Pancrea
7	chr3:133307400-133326400	Weak transcription	Right Ventricle	heart
8	chr3:133307400-133331200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
10	chr3:133307800-133319600	Weak transcription	Hela-S3	cervix
11	chr3:133308000-133324400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:133308000-133335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:133308200-133317600	Weak transcription	K562	blood
14	chr3:133308200-133326400	Weak transcription	Fetal Brain Male	brain
15	chr3:133308200-133326400	Weak transcription	Fetal Kidney	kidney
16	chr3:133308200-133326400	Weak transcription	Ovary	ovary
17	chr3:133308200-133326600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:133308200-133326600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:133308200-133327400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr3:133308200-133330600	Weak transcription	Gastric	stomach
21	chr3:133308200-133342200	Weak transcription	Brain Substantia Nigra	brain
22	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
23	chr3:133308400-133314000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:133308400-133319600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:133308400-133320200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:133308400-133327400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:133308600-133311000	Weak transcription	Spleen	Spleen
28	chr3:133308600-133314000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:133308600-133316600	Weak transcription	Fetal Muscle Leg	muscle
30	chr3:133308600-133317200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr3:133308600-133318000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:133308600-133318400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:133308600-133318400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:133308600-133323400	Weak transcription	Fetal Brain Female	brain
35	chr3:133308600-133323800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr3:133308600-133324600	Weak transcription	HepG2	liver
37	chr3:133308600-133325000	Weak transcription	Liver	Liver
38	chr3:133308600-133326000	Weak transcription	Fetal Lung	lung
39	chr3:133308600-133326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr3:133308600-133326400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr3:133308600-133326400	Weak transcription	Small Intestine	intestine
42	chr3:133308600-133327400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
45	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr3:133308800-133314200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr3:133308800-133315400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr3:133308800-133315400	Weak transcription	Thymus	Thymus
50	chr3:133308800-133316600	Weak transcription	Dnd41	blood

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