Variant report

Variant	rs9820344
Chromosome Location	chr3:133303672-133303673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133297624..133299633-chr3:133303195..133305687,2	MCF-7	breast:
2	chr3:133162655..133165073-chr3:133302328..133304905,2	MCF-7	breast:
3	chr20:52389038..52391230-chr3:133302183..133304209,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10049041	1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[ASN][1000 genomes]
rs11919027	0.92[ASN][1000 genomes]
rs11923695	0.92[ASN][1000 genomes]
rs11928489	1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[ASN][1000 genomes]
rs12695595	0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs13072634	0.92[ASN][1000 genomes]
rs13072780	1.00[JPT][hapmap]
rs13096215	0.92[ASN][1000 genomes]
rs13318046	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382700	0.82[JPT][hapmap]
rs16840681	1.00[MEX][hapmap]
rs34062652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34844086	0.92[ASN][1000 genomes]
rs35824665	0.84[ASN][1000 genomes]
rs67852078	0.92[ASN][1000 genomes]
rs71317412	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71317413	0.92[ASN][1000 genomes]
rs71317414	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824964	0.88[YRI][hapmap];0.92[ASN][1000 genomes]
rs9830529	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841141	0.92[ASN][1000 genomes]
rs9850362	1.00[JPT][hapmap];0.89[MKK][hapmap];0.88[YRI][hapmap];0.92[ASN][1000 genomes]
rs9857351	0.92[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133294200-133306000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:133294600-133308800	Strong transcription	H1 Cell Line	embryonic stem cell
3	chr3:133294800-133309800	Strong transcription	Fetal Muscle Trunk	muscle
4	chr3:133295200-133308400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:133295400-133308800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:133295400-133308800	Strong transcription	Fetal Intestine Large	intestine
7	chr3:133295400-133309200	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:133295400-133309200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:133295600-133308800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:133295600-133309200	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:133295600-133309200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:133295600-133309400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:133295600-133310400	Strong transcription	Fetal Stomach	stomach
14	chr3:133297600-133308400	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr3:133297600-133308600	Strong transcription	Fetal Muscle Leg	muscle
16	chr3:133297600-133308800	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr3:133297600-133309400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:133297600-133309400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:133297600-133310200	Weak transcription	Right Atrium	heart
20	chr3:133297800-133304000	Weak transcription	Stomach Mucosa	stomach
21	chr3:133298000-133304800	Weak transcription	Fetal Brain Male	brain
22	chr3:133298000-133305800	Strong transcription	Fetal Intestine Small	intestine
23	chr3:133298000-133308800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:133298000-133309000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:133298000-133309000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr3:133298200-133304000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:133298200-133305200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:133298200-133307200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:133298200-133307600	Strong transcription	Osteobl	bone
30	chr3:133298200-133307800	Weak transcription	Fetal Heart	heart
31	chr3:133298200-133308000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:133298200-133308600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:133298200-133308600	Strong transcription	HUVEC	blood vessel
34	chr3:133298200-133308800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:133298200-133308800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:133298200-133308800	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr3:133298200-133308800	Strong transcription	Dnd41	blood
38	chr3:133298200-133309200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:133298600-133305600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:133298600-133306800	Weak transcription	Gastric	stomach
41	chr3:133298600-133308800	Strong transcription	Thymus	Thymus
42	chr3:133298600-133309000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr3:133298600-133309400	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr3:133298800-133306800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:133299000-133308800	Strong transcription	Placenta	Placenta
46	chr3:133299400-133305400	Strong transcription	NH-A	brain
47	chr3:133299600-133305400	Strong transcription	NHDF-Ad	bronchial
48	chr3:133299600-133308600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr3:133299600-133309200	Strong transcription	Rectal Smooth Muscle	rectum
50	chr3:133300000-133304800	Strong transcription	Primary hematopoietic stem cells	blood

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