Variant report

Variant	rs67852078
Chromosome Location	chr3:133294811-133294812
allele	AAT/GAC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:132440102..132442906-chr3:133291126..133294877,5	K562	blood:
2	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
3	chr3:133293596..133295529-chr3:133326380..133328140,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248724	Chromatin interaction
ENSG00000249993	Chromatin interaction
ENSG00000163781	Chromatin interaction
ENSG00000113971	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10049041	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919027	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923695	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928489	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695595	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096215	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318046	0.92[ASN][1000 genomes]
rs13321896	0.92[ASN][1000 genomes]
rs1348574	0.90[EUR][1000 genomes]
rs2099985	0.83[EUR][1000 genomes]
rs34062652	0.92[ASN][1000 genomes]
rs34672862	0.83[EUR][1000 genomes]
rs34844086	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35824665	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55633281	0.80[EUR][1000 genomes]
rs57447001	0.84[EUR][1000 genomes]
rs60695717	0.82[EUR][1000 genomes]
rs6774104	0.88[EUR][1000 genomes]
rs6779063	0.90[EUR][1000 genomes]
rs6798570	0.88[EUR][1000 genomes]
rs71317412	0.92[ASN][1000 genomes]
rs71317413	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71317414	0.92[ASN][1000 genomes]
rs71317417	0.93[EUR][1000 genomes]
rs9810823	0.84[EUR][1000 genomes]
rs9818377	0.83[EUR][1000 genomes]
rs9820344	0.92[ASN][1000 genomes]
rs9824964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827019	0.88[EUR][1000 genomes]
rs9830529	0.92[ASN][1000 genomes]
rs9836356	0.90[EUR][1000 genomes]
rs9841141	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847690	0.83[EUR][1000 genomes]
rs9850362	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852403	0.83[EUR][1000 genomes]
rs9857351	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865536	0.88[EUR][1000 genomes]
rs9871504	0.93[EUR][1000 genomes]
rs9881110	0.93[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133291600-133295000	Active TSS	Colonic Mucosa	Colon
2	chr3:133291600-133295000	Active TSS	Right Atrium	heart
3	chr3:133291800-133295000	Active TSS	Left Ventricle	heart
4	chr3:133291800-133295400	Active TSS	Aorta	Aorta
5	chr3:133292000-133295000	Active TSS	NHLF	lung
6	chr3:133292400-133295000	Active TSS	Sigmoid Colon	Sigmoid Colon
7	chr3:133292400-133295200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:133293200-133295600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:133293200-133296000	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
10	chr3:133293400-133295400	Transcr. at gene 5' and 3'	Dnd41	blood
11	chr3:133293400-133295600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
12	chr3:133293400-133295600	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
13	chr3:133293600-133295200	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
14	chr3:133293600-133295400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
15	chr3:133293600-133295400	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
16	chr3:133293600-133295600	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:133293600-133295600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
18	chr3:133293600-133295600	Transcr. at gene 5' and 3'	NHEK	skin
19	chr3:133293600-133297600	Transcr. at gene 5' and 3'	HSMM	muscle
20	chr3:133293600-133298400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
21	chr3:133293800-133295000	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr3:133293800-133295200	Transcr. at gene 5' and 3'	A549	lung
23	chr3:133293800-133295400	Transcr. at gene 5' and 3'	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:133293800-133295400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:133293800-133295400	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
26	chr3:133293800-133295400	Transcr. at gene 5' and 3'	HSMMtube	muscle
27	chr3:133293800-133295400	Transcr. at gene 5' and 3'	K562	blood
28	chr3:133293800-133295600	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
29	chr3:133293800-133295600	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
30	chr3:133293800-133295600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr3:133293800-133295600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:133293800-133295600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
33	chr3:133293800-133295600	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
34	chr3:133293800-133295600	Transcr. at gene 5' and 3'	HMEC	breast
35	chr3:133293800-133296200	Transcr. at gene 5' and 3'	Thymus	Thymus
36	chr3:133293800-133296800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr3:133294000-133295200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr3:133294000-133295400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:133294000-133295400	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
40	chr3:133294000-133295400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
41	chr3:133294000-133295400	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
42	chr3:133294000-133295400	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
43	chr3:133294000-133295400	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
44	chr3:133294000-133295400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:133294000-133295400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr3:133294000-133295400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:133294000-133295400	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
48	chr3:133294000-133295600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:133294000-133295600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr3:133294000-133295600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links