Variant report

Variant	rs11923695
Chromosome Location	chr3:133290518-133290519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
2	chr3:133287190..133289166-chr3:133290175..133292220,2	K562	blood:

Variant related genes	Relation type
ENSG00000249993	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10049041	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919027	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928489	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695595	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072634	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096215	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318046	0.92[ASN][1000 genomes]
rs13321896	0.92[ASN][1000 genomes]
rs1348574	0.88[EUR][1000 genomes]
rs2099985	0.82[EUR][1000 genomes]
rs34062652	0.92[ASN][1000 genomes]
rs34672862	0.82[EUR][1000 genomes]
rs34844086	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35824665	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57447001	0.82[EUR][1000 genomes]
rs60695717	0.81[EUR][1000 genomes]
rs6774104	0.86[EUR][1000 genomes]
rs6779063	0.88[EUR][1000 genomes]
rs67852078	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798570	0.86[EUR][1000 genomes]
rs71317412	0.92[ASN][1000 genomes]
rs71317413	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71317414	0.92[ASN][1000 genomes]
rs71317417	0.91[EUR][1000 genomes]
rs9810823	0.82[EUR][1000 genomes]
rs9818377	0.82[EUR][1000 genomes]
rs9820344	0.92[ASN][1000 genomes]
rs9824964	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827019	0.86[EUR][1000 genomes]
rs9830529	0.92[ASN][1000 genomes]
rs9836356	0.88[EUR][1000 genomes]
rs9841141	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847690	0.82[EUR][1000 genomes]
rs9850362	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852403	0.82[EUR][1000 genomes]
rs9857351	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865536	0.86[EUR][1000 genomes]
rs9871504	0.91[EUR][1000 genomes]
rs9881110	0.91[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133280800-133290600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:133285000-133291600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:133286600-133291800	Enhancers	HMEC	breast
4	chr3:133286800-133291600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:133287000-133291800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:133287000-133291800	Enhancers	HSMMtube	muscle
7	chr3:133287400-133290800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:133287400-133291000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:133287400-133291200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:133287400-133291600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:133287600-133290800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:133287600-133291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:133287600-133291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:133287800-133290800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:133287800-133290800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:133287800-133291200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:133287800-133291400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:133287800-133291600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:133288000-133291000	Weak transcription	Spleen	Spleen
20	chr3:133288000-133291400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:133288000-133291600	Enhancers	Osteobl	bone
22	chr3:133288000-133292400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr3:133288200-133290800	Enhancers	GM12878-XiMat	blood
24	chr3:133288600-133291000	Enhancers	Primary B cells from cord blood	blood
25	chr3:133289000-133291400	Weak transcription	Adipose Nuclei	Adipose
26	chr3:133289200-133291200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:133289200-133291400	Weak transcription	Fetal Lung	lung
28	chr3:133289200-133291600	Enhancers	HUVEC	blood vessel
29	chr3:133289400-133290800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr3:133289400-133290800	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:133289400-133291000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:133289400-133291000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:133289400-133291200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:133289400-133291200	Weak transcription	Fetal Heart	heart
35	chr3:133289400-133291400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:133289400-133291400	Weak transcription	Fetal Intestine Small	intestine
37	chr3:133289400-133291400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:133289400-133291600	Weak transcription	Right Atrium	heart
39	chr3:133289400-133292600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr3:133289600-133290600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:133289600-133290800	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr3:133289600-133291400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:133289600-133291400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:133289600-133291400	Enhancers	NH-A	brain
45	chr3:133289600-133291600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:133289600-133291600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr3:133289600-133291600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:133289600-133291600	Weak transcription	Fetal Intestine Large	intestine
49	chr3:133289600-133291600	Weak transcription	Psoas Muscle	Psoas
50	chr3:133289600-133292400	Weak transcription	Esophagus	oesophagus

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