Variant report

Variant	rs34519945
Chromosome Location	chr3:133409835-133409836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1051772	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11928864	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13071381	0.84[ASN][1000 genomes]
rs13098235	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13325440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348574	0.93[AMR][1000 genomes]
rs16840601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099985	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2589276	0.90[AMR][1000 genomes]
rs34375330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34672862	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36033747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633281	0.82[AMR][1000 genomes]
rs57447001	0.82[AMR][1000 genomes]
rs58200773	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60695717	0.82[AMR][1000 genomes]
rs6774104	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6779063	0.89[AMR][1000 genomes]
rs6798570	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs71317417	0.89[AMR][1000 genomes]
rs7628914	0.84[ASN][1000 genomes]
rs7637748	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9809614	0.84[ASN][1000 genomes]
rs9810823	0.93[AMR][1000 genomes]
rs9818377	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9818392	0.81[ASN][1000 genomes]
rs9827019	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9836356	0.93[AMR][1000 genomes]
rs9838963	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9839156	0.84[ASN][1000 genomes]
rs9847690	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9852403	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9863830	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865536	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9871504	0.93[AMR][1000 genomes]
rs9876306	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9881110	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516081	chr3:133399702-133412094	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
2	nsv979783	chr3:133408825-133413260	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133407200-133410200	Weak transcription	HepG2	liver
2	chr3:133409600-133410400	Enhancers	Pancreas	Pancrea

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