Variant report

Variant	rs9876306
Chromosome Location	chr3:133343439-133343440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1051772	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928864	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098235	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13315841	0.85[ASN][1000 genomes]
rs13325440	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1348574	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16840601	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2099985	0.86[AMR][1000 genomes]
rs34239013	0.85[ASN][1000 genomes]
rs34375330	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34519945	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34664124	0.85[ASN][1000 genomes]
rs34672862	0.86[AMR][1000 genomes]
rs34736000	0.85[ASN][1000 genomes]
rs35717736	0.85[ASN][1000 genomes]
rs36033747	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58200773	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774104	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6779063	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6798570	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71317417	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7637748	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810823	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9818377	0.86[AMR][1000 genomes]
rs9818392	0.91[ASN][1000 genomes]
rs9827019	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9836356	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9838140	0.82[ASN][1000 genomes]
rs9838963	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847690	0.86[AMR][1000 genomes]
rs9852403	0.86[AMR][1000 genomes]
rs9863830	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865536	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9871504	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9876463	0.85[ASN][1000 genomes]
rs9881110	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
2	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
5	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:133310800-133349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:133314800-133349200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:133314800-133351600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:133316600-133377600	Strong transcription	Dnd41	blood
11	chr3:133316600-133378000	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:133317000-133378200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr3:133317200-133378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:133318400-133378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:133319000-133363800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:133322200-133378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:133322600-133378800	Weak transcription	Stomach Mucosa	stomach
18	chr3:133323200-133378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:133323200-133378400	Strong transcription	Fetal Thymus	thymus
20	chr3:133323200-133378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:133323400-133378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:133323600-133377800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr3:133323800-133378800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:133324200-133378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:133325000-133345000	Weak transcription	Psoas Muscle	Psoas
26	chr3:133325200-133352800	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:133325200-133353000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:133325400-133348200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr3:133326200-133347800	Strong transcription	Fetal Intestine Large	intestine
30	chr3:133327000-133362400	Weak transcription	Small Intestine	intestine
31	chr3:133327600-133351600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr3:133328000-133356400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:133329200-133358400	Weak transcription	Fetal Heart	heart
34	chr3:133329400-133358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:133331200-133352000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr3:133331400-133343600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:133331400-133347200	Weak transcription	Brain Anterior Caudate	brain
38	chr3:133331400-133349400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:133331400-133349400	Weak transcription	Gastric	stomach
40	chr3:133332200-133378600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr3:133333400-133378000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr3:133334000-133345200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr3:133334000-133359200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:133334200-133348400	Strong transcription	Primary T cells from cord blood	blood
45	chr3:133334200-133378400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:133334400-133344000	Strong transcription	Fetal Lung	lung
47	chr3:133334400-133345200	Strong transcription	Stomach Smooth Muscle	stomach
48	chr3:133334400-133368800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr3:133334600-133352800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:133334600-133363200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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