Variant report

Variant	rs11928864
Chromosome Location	chr3:133328058-133328059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZKSCAN1	chr3:133327957-133328072	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr3:133327707-133328210	K562	blood:	n/a	n/a

Variant related genes	Relation type
TOPBP1	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10049041	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs1051772	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695595	0.93[TSI][hapmap]
rs13072780	0.86[MEX][hapmap];0.86[TSI][hapmap]
rs13098235	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13315841	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13325440	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1348574	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16840601	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2099985	0.82[AMR][1000 genomes]
rs2589276	1.00[JPT][hapmap]
rs34239013	0.85[ASN][1000 genomes]
rs34375330	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34519945	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34664124	0.85[ASN][1000 genomes]
rs34672862	0.82[AMR][1000 genomes]
rs34736000	0.85[ASN][1000 genomes]
rs35717736	0.85[ASN][1000 genomes]
rs36033747	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55633281	0.82[AMR][1000 genomes]
rs57447001	0.82[AMR][1000 genomes]
rs58200773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60695717	0.82[AMR][1000 genomes]
rs6774104	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6779063	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6798570	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71317417	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7628914	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7637748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289452	0.88[JPT][hapmap]
rs9289453	0.85[JPT][hapmap]
rs9810823	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9818377	0.82[AMR][1000 genomes]
rs9818392	0.91[ASN][1000 genomes]
rs9827019	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9836356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9838140	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9838963	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847690	0.82[AMR][1000 genomes]
rs9850362	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs9852403	0.82[AMR][1000 genomes]
rs9863830	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865536	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9871504	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9876306	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876463	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9881110	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133305800-133330600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:133306400-133342800	Weak transcription	Colonic Mucosa	Colon
3	chr3:133307000-133328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:133307200-133335800	Weak transcription	Pancreas	Pancrea
5	chr3:133307400-133331200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
7	chr3:133308000-133335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:133308200-133330600	Weak transcription	Gastric	stomach
9	chr3:133308200-133342200	Weak transcription	Brain Substantia Nigra	brain
10	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
13	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:133308800-133328400	Weak transcription	Lung	lung
16	chr3:133310800-133335000	Weak transcription	Aorta	Aorta
17	chr3:133310800-133349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:133314200-133335400	Weak transcription	NHLF	lung
19	chr3:133314800-133335800	Weak transcription	HSMMtube	muscle
20	chr3:133314800-133349200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:133314800-133351600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:133316600-133329800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:133316600-133377600	Strong transcription	Dnd41	blood
24	chr3:133316600-133378000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:133317000-133378200	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr3:133317200-133378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:133318400-133378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:133318600-133328400	Weak transcription	K562	blood
29	chr3:133319000-133363800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:133319200-133328600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:133322200-133378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr3:133322600-133378800	Weak transcription	Stomach Mucosa	stomach
33	chr3:133323200-133333200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:133323200-133341000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:133323200-133378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:133323200-133378400	Strong transcription	Fetal Thymus	thymus
37	chr3:133323200-133378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:133323400-133378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr3:133323600-133331400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr3:133323600-133377800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr3:133323800-133328400	Strong transcription	GM12878-XiMat	blood
42	chr3:133323800-133331400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:133323800-133331800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:133323800-133332000	Strong transcription	Placenta	Placenta
45	chr3:133323800-133332200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:133323800-133378800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr3:133324000-133329800	Weak transcription	Fetal Stomach	stomach
48	chr3:133324200-133378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr3:133324400-133338600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr3:133324600-133329200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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