Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr3:133429618-133430117	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
RNA5SP140	TF binding region

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1051772	0.85[JPT][hapmap]
rs11928864	0.85[JPT][hapmap]
rs13071381	0.83[ASN][1000 genomes]
rs13315841	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13318046	1.00[AMR][1000 genomes]
rs1348574	0.85[JPT][hapmap]
rs2099985	0.86[ASN][1000 genomes]
rs2589276	0.86[JPT][hapmap]
rs34239013	1.00[AMR][1000 genomes]
rs34672862	0.86[ASN][1000 genomes]
rs35717736	1.00[AMR][1000 genomes]
rs35853116	1.00[ASN][1000 genomes]
rs6774104	0.83[ASN][1000 genomes]
rs6798570	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs71331727	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71331728	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628914	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7637748	0.86[JPT][hapmap]
rs9289452	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809614	0.83[ASN][1000 genomes]
rs9810823	0.85[JPT][hapmap]
rs9815273	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818377	0.86[ASN][1000 genomes]
rs9827019	0.83[ASN][1000 genomes]
rs9836356	0.85[JPT][hapmap]
rs9838140	0.86[JPT][hapmap]
rs9839156	0.89[ASN][1000 genomes]
rs9847690	0.86[ASN][1000 genomes]
rs9852403	0.86[ASN][1000 genomes]
rs9852789	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865536	0.83[ASN][1000 genomes]
rs9876463	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv963279	chr3:133426521-133449029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133411800-133430800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:133412200-133437600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:133418800-133437600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:133427800-133431200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:133428600-133430400	Weak transcription	Spleen	Spleen
6	chr3:133429600-133431000	Enhancers	HepG2	liver

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