Variant report

Variant	rs13098621
Chromosome Location	chr3:55914171-55914172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13069069	0.85[EUR][1000 genomes]
rs34100493	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34224277	0.85[EUR][1000 genomes]
rs34989245	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13098621	ASB14	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55893600-55923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:55903800-55922000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:55912200-55916000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:55912800-55914600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:55913200-55914600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:55913200-55914800	Enhancers	Fetal Lung	lung
7	chr3:55913200-55916800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:55913200-55916800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:55913400-55914200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:55913400-55915800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:55913400-55916800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:55913400-55919400	Weak transcription	Fetal Kidney	kidney
13	chr3:55913600-55914600	Enhancers	NHLF	lung
14	chr3:55913600-55914800	Enhancers	Hela-S3	cervix
15	chr3:55913600-55915400	Enhancers	HMEC	breast
16	chr3:55913800-55914200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:55914000-55914200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:55914000-55914200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:55914000-55914600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:55914000-55914600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:55914000-55914600	Enhancers	A549	lung
22	chr3:55914000-55914800	Enhancers	NHEK	skin
23	chr3:55914000-55915400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:55914000-55915400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:55914000-55915400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:55914000-55915600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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