Variant report

Variant	rs34989245
Chromosome Location	chr3:55888534-55888535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr3:55888470-55888877	SK-N-SH_RA	brain:	n/a	n/a

Variant related genes	Relation type
MIR3938	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13069069	0.83[EUR][1000 genomes]
rs13098621	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34100493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34224277	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55886200-55888600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:55887400-55890200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:55887400-55890400	Enhancers	Fetal Lung	lung
4	chr3:55887800-55889400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:55887800-55889800	Enhancers	Fetal Stomach	stomach
6	chr3:55888000-55888800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:55888000-55888800	Enhancers	Fetal Muscle Trunk	muscle
8	chr3:55888200-55888600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:55888200-55888600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:55888200-55889000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:55888200-55889200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:55888400-55888800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:55888400-55888800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr3:55888400-55888800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:55888400-55888800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:55888400-55888800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:55888400-55888800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr3:55888400-55888800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:55888400-55888800	Enhancers	Brain Germinal Matrix	brain
20	chr3:55888400-55889000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:55888400-55889000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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